Fase013271.1
Basic Information
- Insect
- Formica aserva
- Gene Symbol
- retn
- Assembly
- GCA_037039905.1
- Location
- JAXRKO010000010.1:5603779-5613412[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.3e-20 2.5e-16 61.3 0.0 16 89 187 258 180 258 0.93
Sequence Information
- Coding Sequence
- ATGAAACTTTGTCTCCACTTGCTTGCGATTTGTGTTTTGCGCATTCTTGTCTCCGAGTCGACGACTGTCGCGCGTACTCGAATCGCAGTCGACGCTCTCCGAGAATGCAAAACCGGCTTAGGCGACACAACTTGGAGCTCTTGGACAGATAATCGGAAAAGAGAGGATATATGGCTagagaggagagaagagaCGACGGAGGAACGGGGTTCCCGACTTTGTTTCTTCTCGAGAAAGATATTTGATGTGGGAAAACAAGTGGAAGTCGGGGCTGGACACCCTTATTTTGGCGAGAAACAGCCAAGCTGCGGGCTGTTGTCTTTCGCAGGGATATTGTTACCCCGATTGTTCTTGCCGTGCGAAACTATCTGCGATCTTCTTCTAGACACGCGTCGCCCGCGAATATTTATGCGCGACTCTAAACCTCAGATTACGCCAACTCGTAAAAGCCCGTTTACGTTTACGTACTTTAAAACGCGCACTATAGTCGCGAGTACTGCTGCTCTTGTTAACACCCCGTTAACTCGTAGCTCGGGCAACCTCGTAAAATTCGACTACCATGGGACACCTATTAATCGTCTACCTATCATGGCAAAATCTGTACTGGATCTTTTCGAGCTTTACAAGCTAGTAGTCATGCGAGGTGGCCTTGTCGAAGTCATCAACAAGAAGCTGTGGCAAGAGATCATTAAAGGTCTTCGGTTGCCGGCGAGCATCACTTCCGCGGCATTTACTCTACGCACACAgtatatgaaatatttgtacCCGTATGaacaacaaaaggaaaatcTCTCGACCCAGGAGCAACTGCAGACGGCGATCGAGACGAATCGTCGCGAGAGCCGCAGAAGCAATTACACCACTTACGCTACTAACAACGAAAATATGGTAGCGCGAAATCAACATAATTCGCTGCCATCGAATGCGTTGGCACTGCCGATGCCACTTAGCATGGCCCAAATGGATCTCCATGGATCGCAATCGGCGTTCGTAAACGGACACCCGCAGCATCATTCTCATAACTCGCAGCATGTTCCGCCGAACCTAGGACAAGTATCCAATCtttCAGAATACATGATGAAGATGCTGAGAGATAGAAATACGATTACCAATAACTCGATAATTCCACAACAGACTGGCAATTCACCACCGACGACGGAAGCACTTAACGCAATTGAATTGTCCAAACTGACTCtatggaatatatataaccaaaataataacaaaatttattcagCTCAACAATCCTTCCCTTCGTCAACGTCCCACTCGCCATTAGTGCCGGCAACTAGCCCGGAACCGCAAAGGGAAGCCCTGGACCTTGCAAACTCTGCACATAGGTCAGATCCGATATCCTCTCCAAGCGCTAGTAGATCTATTAGTTCACCACCGTCTGGTAACATGAAAAGAGATCAAGATGCTACGGATCTTTCACCTCCAACGTCTAGCAAAAGAATATGTTCCGATGAGGAAAATTTACCCGATAGGGGTAGTAGTATGCGCATTACGCAGATGGTCACCATACGAGaGAGTGGACGAAGGGAACTAGCAATTAGCGTGGACCTCGATGGTATATTATACGAAGGCATTTTACCAGCTAAAAACGACGACGCCAGCAGTTCATGA
- Protein Sequence
- MKLCLHLLAICVLRILVSESTTVARTRIAVDALRECKTGLGDTTWSSWTDNRKREDIWLERREETTEERGSRLCFFSRKIFDVGKQVEVGAGHPYFGEKQPSCGLLSFAGILLPRLFLPCETICDLLLDTRRPRIFMRDSKPQITPTRKSPFTFTYFKTRTIVASTAALVNTPLTRSSGNLVKFDYHGTPINRLPIMAKSVLDLFELYKLVVMRGGLVEVINKKLWQEIIKGLRLPASITSAAFTLRTQYMKYLYPYEQQKENLSTQEQLQTAIETNRRESRRSNYTTYATNNENMVARNQHNSLPSNALALPMPLSMAQMDLHGSQSAFVNGHPQHHSHNSQHVPPNLGQVSNLSEYMMKMLRDRNTITNNSIIPQQTGNSPPTTEALNAIELSKLTLWNIYNQNNNKIYSAQQSFPSSTSHSPLVPATSPEPQREALDLANSAHRSDPISSPSASRSISSPPSGNMKRDQDATDLSPPTSSKRICSDEENLPDRGSSMRITQMVTIRESGRRELAISVDLDGILYEGILPAKNDDASSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -