Fari007905.1
Basic Information
- Insect
- Fopius arisanus
- Gene Symbol
- -
- Assembly
- GCA_000806365.1
- Location
- NW:1516409-1524581[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3 2e+02 2.0 0.5 1 23 63 88 63 89 0.91 2 20 6.8e-05 0.0046 16.6 1.6 3 23 97 118 96 118 0.98 3 20 0.027 1.8 8.4 1.4 2 23 134 155 134 156 0.95 4 20 4.6 3.1e+02 1.4 5.4 1 23 162 184 162 184 0.97 5 20 0.00089 0.06 13.1 0.7 2 23 190 211 189 211 0.97 6 20 9.9 6.7e+02 0.3 1.5 6 23 455 472 453 473 0.86 7 20 0.00093 0.063 13.0 1.6 2 21 484 503 483 504 0.95 8 20 1.4 92 3.0 1.0 1 23 575 597 575 597 0.82 9 20 2.6 1.8e+02 2.1 0.8 2 23 758 779 757 779 0.95 10 20 0.1 7 6.6 0.3 2 23 794 815 793 815 0.92 11 20 0.0058 0.39 10.5 0.2 1 23 823 845 823 845 0.98 12 20 0.023 1.5 8.6 2.1 1 23 903 925 903 925 0.97 13 20 0.078 5.3 6.9 0.3 3 23 939 959 937 959 0.94 14 20 0.00091 0.062 13.0 0.2 1 23 1036 1058 1036 1058 0.98 15 20 0.0073 0.5 10.2 0.6 1 23 1126 1148 1126 1148 0.97 16 20 1.9e-05 0.0013 18.3 0.6 1 23 1154 1176 1154 1176 0.97 17 20 0.0027 0.18 11.6 2.5 1 23 1230 1252 1230 1252 0.97 18 20 0.0011 0.077 12.7 2.4 1 23 1258 1280 1258 1281 0.96 19 20 7.5 5.1e+02 0.7 0.1 2 23 1359 1380 1358 1380 0.90 20 20 0.021 1.4 8.7 0.3 3 23 1389 1409 1388 1409 0.97
Sequence Information
- Coding Sequence
- ATGTCTGAGCAGTATCGGTCGCTGCGTCCTCGACGTtcgattttacaaaaaaaaggtCGTGCCAGTGAAGAGGAAGCATCCGGTGGTGATGACACAGAGATGGGAAAAGATGACAGTGATTGCGAGCCTCGACTCGTCATCAAAGAGGAAACTGATGATAATATTGAAGACAAGGGGGAGAGAATATACGAGTGCAACTCTTGTAATTCCACAGTAGAGTTCGCCAATCTTGCAGACTACCTTCAGCATCTGAAGGAGGAGCACCACCAAAAAAGCAAAACCCATGGCTGTCCCCACTGCAATTACACCtatcaaaattccaaaaagCTCCAGAGGCACATTCTCACGGCCCACAAGGACGTTCAGGGTGAAAAATCGGGTGAAATAGTGCGAAGAAACAGGTGTACAATGTGTAATTTTGTCGCTTATACACCAACTGATATGGAAAATCATCAGAGGCTTCATCACCTCAAGAGGCGATTTTTTCGGTGCACAAAGTGCTCTTATATGACTCATGTCCGTGCACGATACACCAAACACGTGAAATACCATTCCATGCCAATGATAAAATGCGATGATTGTGATTTTCGAACTCCTTATAAGTGGAATCTTGATCGACATACGAGGAATCATGGGGGTGGTGGGGCCTTTCAGTGTCGGGCTTGCAATTTTACTGCTGAGATCCGACAGAGTTTGACGGTACATGAGGCCAATCATCATGAACCGCCGATTGAGCAGATGGCGAGTAAGATGAGCAGTCCTTTTGAACGAAAACCAAGAAATTGTCCTAAGCGTTATAATCAGGTTGGTGCCAGTGATTACCGCGAAGTGCCGACAATTGAAAAGTCCCCAGTGATTGAAAACTCAGTAGACGTAGAAGATCATAAGAATTCTAGTAACTCAGATGGTGCGGATTGTATTGCGTTAAAATGCGAGGAGAAGGGCTGTCAGTTTATAACTGCCTGGGACTCTGAAATGCAACGACATTTGGCTGAATCACACGCTGGTCAGTCCCCTGGTAAGAGGAAACCCCTGCCGATGCTGATTCCATTGAGTCCTGGAAGCAACCCTCCAAGTGTCAGTGCGTCCACTAGCCCTCCGACTACAGTTCTCAATGTGCCGCGAGTCAGAGTGAGGCCAGAGCTTGCGAAAATCGCCAGAGATACTGAAATCGCCAAATTGTATAGTAACCCTGAGGTGAATGGGGATAAAGAAGCCAGTCCCcaaaaaaactttgaaaaaagaaatgccTCATTCTTCGACAAACTCAAGGAACGTCTGTTAACAAGTTCTGGAATCACCCAAGCCACCATGAATAACCAAGTAGCAGCTGTAAGTAATGTCAACGATCTAAAGTGTTGGTGCACGTTTGAAGCAAGTAGTCAGGATGAAATGTCAAGTCATAGAAAAACCCATCACACTGCGCTCAGTGTGTCTCTTGGCGTATCGCGATGTCCAAAGTGTCGAAGACGTTGCAAAACTTCGGGCGATCTCCAGATGCACATTAAAATATGCCCAgcgtacaataataataacgacaATAATGATAGAAATAATAGCCAGGAGAACACTGTCAACAGTGATAGCTATGCAACAACTTCTTCCTCCAATGATTTTGACTTACCATTGCAAGTGGACTGGGATGCAAATTACAGCGGACTTAATTCCTCTGGATCCTCGGTGGAAGGGGGGGTCCCTCAAAGTACAACAGCTCGACGAGTGTTCAAGTGTCCCCACTGCCCATTCTGGGCATCGACAGCGAGTAGATTCCACGTCCACATCGTTGGCCACCTGAATCGCAAACCCTTCGAATGCTCTTTATGCGCGTACAGATCCAATTGGCGATGGGATATAACGAAACATATTAAACTGAAAGCAGCCCGAGATGCAGCTCACGTGAATGCCCGGGTGCTGATGACTGATGAGACGGGTCGTCGTAACTATTCCAAGTATAATAAATATCTGACTCAGCTGCACCAAGGGTCGGACGCGCCAGCATCAGAAGAGACACAAGGATGTCTTCGCTCAGGCGAGCCCGCCCGAAAGGTCTTCATAACCACGGACCCATTCTCTGGGGCCTTGAAACGTCGTTCAAAGGTAATGAGTTCCCTCTCAGTGGACGTATCATCGGGAACAATCGTCAAGCCGTTTCAACTTCCCCGACTCCACGGCCAGTCCCTCCTGAAGGTGAATCCGGCTGCTCCCTCTCCCCCAAGGGCTGATCAACAGTCCTCCCCAAAATCCTCTGAGGAGACAAAACGTACTCTCTGGAAATGCAAACGCTGCAACTACCGTGACTCCAGCAAAGAGGTGCTCTTACTTCACGTCAAGAGTCACTacgaaaaattggagagagCTGCAGAGAAATCcaacaaattgaaatgcaCTGATTGCCCTTTCGTTGCAAACGACCAGGAGTCCTTGGCCCTTCACAAGGTGCATCATCGTCCGAACCTCGAGGCCATTTTCAAGTGTTACCTGTGTCCCTACTATGTCAGCACAAAGGCAGAACTCCTGGAGCACGCACGTCTTCACGGTGAGGAGTTGTCAGTGGTACATCAGTCAGACTCCAAGTCACAATCACAGCAAACCCTGAGACATGCCTCAGGTGACCAGGAAACCCCGCCTCTTCTCCTGGACACTCGAGCTCTTCCAGACACACCGATGGTCTGGGTTTCGAAACCAGATGGCATCTTCGCCAAAATGTTCAAATGTCGTCACTGTCCTCACGTCTCTTCGAGACGAGCAGAGGTCCGAGACCACGAGATAATGCACCTGAACGCGGATACCAGTGCTCTGGGTGTTCCCATTGCCTGTCCAGACTGCAGTTTCACTTGCACTCAGAGGGACGTCATGGAGTCCCATGCAGCGATGCACCTAGGCTCTCTGGGAACTGTTCACTGCCTGGTGGCTGACAACAGGAGTGATTCGCAGCAGCTGGACGACCTCAAGAGCATCCTGGGGCTGGCTAAAGCTCCAACTCTCGGTCCAGATCCTGATCTCAGAGACTCCAGGCTCGTCTACAGCTGCAGCAAGTGTCCAGCCAGATTCTTATGTGATAAGGAACTGAAGATTCATCTTCGTTATCACTCAACCTCATTGGCATATACCTGTGACTGGTGCACTTATGCTGCTAGACAGCCTGCACATCTGCTAGCTCATCAGAAGGCACATTCCAGTGAGTACCAGGAACGCACTCGTTGTCTGTCATCAATCTATGGTAATTCCCAACGATTTCCACCACCTCTCACTGCCTGTGTCGAGGTCAACAGCCAGACAAATGACGATAGAAGGGAATTCGCTTGGATTGTCGTCGAGGTGTCAAACCCCACTGGACACACCCAAGAGTACACTCATGATTCAAAGAATCAGGTGTTCACCTGCACTAAATGCCCGGCCCGGTATTTTAAGCTCGATGCCCTCGAGTACCACATGACCCTGCATGGCTCCAACAACAGGTTCAAGTGCGAGGAGTGCGATTACTCATCTAAAACAGCTCAAAACCTTATGAAGCACCAGGTGGTCCACAGAAGGCAGCCAGAGCCTTTGGAGCTACCTCATGAGGTATTGCAAGGTCAGAGTCGATTACAGGCATCTTCACACACTCAGGAAGACATCGTCTCAACTGGAAATCCCAATTTTGTGTATCCAGGGTACATTAGGCATGGCAAGTTCAAGGAGAAGAAGTACAAGTGTCACAAGTGTCCCTCGGCCTTCGAGAAACGAGAGCAATACAGAATTCATCTCTCTCTTCATGGATCCAAGCAGAAGTACAGGTGTGAGACGTGCGATTATGCTGTCAAGTACTATGCGAATTATGTGCAACACTTGAGGAAGCATCATGCTAATGCTGAGGCACAGGCTTCCAGGAGGCAgatggaggtggaggaggagaTTATTCGGGATGAGGAGGAGTACGTGGTGAAGTCGAGGAGAAAGTCTACAGGTGGAAATAGGGATTTGGGGATTATTGGGGAAGCCATTTCTCCGGTGTCCAATCAGGATAAGCAGACGATGCTGCTGATTCAGAGGAAGGCATCTTCCCTTTTGAATGAAGCCAATGAAAATGTACTGAGGTGTCTCGAATGCCCTTTCTCTGCTACTGATCAAGCTATCATGGATGCTCATAAAAGACGACATGGGATTGAGAGACTCACTCCACCGTGTCCTCATTGCAATTATGTACCCAGAAAAGATGAGAATCTTAATGAACACATTAGGCTCCACTTCAACAGGATGTACAAGCCTGAGGGATATTTGATCGTTGAAATGTTGACTCTTAGAATGGAGAAGCAAGAAGAGGGCGATGAGAAGGGTAAGGAGAATGAAATGCTCTTTTGTGAATCTTTTGAGGGGAAGTTTCTTCCTGTCACTGATATTGTCAGTACTTCGCCAGTGGCCAAGGGGAGGGATTTCCAGGAGAAGATCGTCATTGATGCAAACACTGGAGAGGCCACCCATGGCATCAAAGATTAA
- Protein Sequence
- MSEQYRSLRPRRSILQKKGRASEEEASGGDDTEMGKDDSDCEPRLVIKEETDDNIEDKGERIYECNSCNSTVEFANLADYLQHLKEEHHQKSKTHGCPHCNYTYQNSKKLQRHILTAHKDVQGEKSGEIVRRNRCTMCNFVAYTPTDMENHQRLHHLKRRFFRCTKCSYMTHVRARYTKHVKYHSMPMIKCDDCDFRTPYKWNLDRHTRNHGGGGAFQCRACNFTAEIRQSLTVHEANHHEPPIEQMASKMSSPFERKPRNCPKRYNQVGASDYREVPTIEKSPVIENSVDVEDHKNSSNSDGADCIALKCEEKGCQFITAWDSEMQRHLAESHAGQSPGKRKPLPMLIPLSPGSNPPSVSASTSPPTTVLNVPRVRVRPELAKIARDTEIAKLYSNPEVNGDKEASPQKNFEKRNASFFDKLKERLLTSSGITQATMNNQVAAVSNVNDLKCWCTFEASSQDEMSSHRKTHHTALSVSLGVSRCPKCRRRCKTSGDLQMHIKICPAYNNNNDNNDRNNSQENTVNSDSYATTSSSNDFDLPLQVDWDANYSGLNSSGSSVEGGVPQSTTARRVFKCPHCPFWASTASRFHVHIVGHLNRKPFECSLCAYRSNWRWDITKHIKLKAARDAAHVNARVLMTDETGRRNYSKYNKYLTQLHQGSDAPASEETQGCLRSGEPARKVFITTDPFSGALKRRSKVMSSLSVDVSSGTIVKPFQLPRLHGQSLLKVNPAAPSPPRADQQSSPKSSEETKRTLWKCKRCNYRDSSKEVLLLHVKSHYEKLERAAEKSNKLKCTDCPFVANDQESLALHKVHHRPNLEAIFKCYLCPYYVSTKAELLEHARLHGEELSVVHQSDSKSQSQQTLRHASGDQETPPLLLDTRALPDTPMVWVSKPDGIFAKMFKCRHCPHVSSRRAEVRDHEIMHLNADTSALGVPIACPDCSFTCTQRDVMESHAAMHLGSLGTVHCLVADNRSDSQQLDDLKSILGLAKAPTLGPDPDLRDSRLVYSCSKCPARFLCDKELKIHLRYHSTSLAYTCDWCTYAARQPAHLLAHQKAHSSEYQERTRCLSSIYGNSQRFPPPLTACVEVNSQTNDDRREFAWIVVEVSNPTGHTQEYTHDSKNQVFTCTKCPARYFKLDALEYHMTLHGSNNRFKCEECDYSSKTAQNLMKHQVVHRRQPEPLELPHEVLQGQSRLQASSHTQEDIVSTGNPNFVYPGYIRHGKFKEKKYKCHKCPSAFEKREQYRIHLSLHGSKQKYRCETCDYAVKYYANYVQHLRKHHANAEAQASRRQMEVEEEIIRDEEEYVVKSRRKSTGGNRDLGIIGEAISPVSNQDKQTMLLIQRKASSLLNEANENVLRCLECPFSATDQAIMDAHKRRHGIERLTPPCPHCNYVPRKDENLNEHIRLHFNRMYKPEGYLIVEMLTLRMEKQEEGDEKGKENEMLFCESFEGKFLPVTDIVSTSPVAKGRDFQEKIVIDANTGEATHGIKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00438340;
- 90% Identity
- -
- 80% Identity
- -