Fari008382.1
Basic Information
- Insect
- Fopius arisanus
- Gene Symbol
- -
- Assembly
- GCA_000806365.1
- Location
- NW:394539-415848[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 4.7 3.2e+02 1.3 0.9 2 21 12 31 11 32 0.88 2 16 3.2 2.2e+02 1.9 0.7 3 23 325 347 325 347 0.86 3 16 0.52 35 4.3 1.1 2 23 409 429 408 429 0.95 4 16 2.2 1.5e+02 2.3 2.9 1 23 461 485 461 485 0.91 5 16 0.0068 0.46 10.3 3.7 2 21 542 561 541 565 0.89 6 16 2.5e-05 0.0017 18.0 1.1 3 23 581 602 579 602 0.96 7 16 0.18 12 5.8 0.7 1 23 614 638 614 638 0.92 8 16 0.1 6.9 6.6 0.9 3 23 657 678 656 679 0.93 9 16 0.0052 0.36 10.6 0.5 1 21 683 703 683 704 0.94 10 16 0.0031 0.21 11.4 0.2 1 23 765 786 765 786 0.98 11 16 4.9e-05 0.0033 17.0 2.8 1 20 792 811 792 813 0.93 12 16 2.5e-05 0.0017 17.9 1.9 1 23 832 854 832 854 0.98 13 16 0.0019 0.13 12.0 0.1 1 23 859 884 859 884 0.96 14 16 6.2e-05 0.0042 16.7 0.4 1 23 893 915 893 915 0.98 15 16 0.0011 0.077 12.7 0.9 2 23 925 948 924 948 0.96 16 16 0.0012 0.078 12.7 1.5 1 21 954 974 954 979 0.94
Sequence Information
- Coding Sequence
- ATGGAGCATTATGAGGATGATGAAGACACCCACTACTGCataaaatgtcacgttacagtgACGGGTCTTGACAATTACGTTCGACACCGTCAGTCAGGCTGTCGCCCGTCAGAGCCGAAGAATGAAGTCATGTATCCAGAACTCTTGAATGCCGACACGTTCTTCAATTCCCTGGAACTTCGGAGTAGTGTCAAGCCAAAAGCTAGTAGTGAGGCACTCGATGACCGAAACAAAAAGTCCAGAGGCGATGACAAGCGCAGGAAGCGAAGGCGATGTCAGGAGATTGAGGAGTCGACGtccaaggaaaaattgatgacttTGTCACCAGGTGTGACGGACTTGGACGATCCGACTGATCACATTGGGATTCCCTCGCTGGTGGGATTTCCGGACATCGTGACATTCGGTGATAAATCATCGACGGTGGCACCAAATAAAATCACGGCCAAGATTCCTGACAAGAAGCGAAACGACGACCACCGGGTCTGGTTGAATGACAGCATTCTCGAGGACTTGGATGGCAATAAAGAGGTGGGATCACCCAGGGAACCGCTTGATAGTGATGCAGATTACGATTACAGGCGTGGACAGGAGTCGGAGGCGGagagtgatgatgatgattcttATTCGGAGTCTGAGGAAGAAGGGGAGTACGAGTCGCAGGCTCATACGGGAGGCAAATGGAAGCCCGACCAGTTGCTCCAGGAGATATCAACCCAGAATGACGATGAAGTTGAGCAGGAGGATTATCGGCAGGACAGCCCACCCTCCCACACTGGGGGTAAATGGAAGCCAACGGATCAGAAAACCGAGGATGGTCAGGTGAATGTAGATGAGGAGGAGGACGAGGACGATGAAAATGACGACGATGAGGAGAAGGACACAAGACAACCGCCACCAGGTCACACCCGTGGCAAATGGATTCCAGGGGTATCTGTAGTCAGTGGAGCCACCACTGACTCCAGCTACTGGTGCACTCCCTGCAGCAGACGCCTCGCCTCAAAACTTCTCTACAACAGACATCTGCGATCTGATCTCCACGCGAGAAGAAGTATCCAGGAAATCGAGGGAGATATCAAGCTACCGAGAACCGTTGGTCCACTGCTGAGGCGAAAGACCCTGAGCAAACGGCAACAGGCACTCGCACTTAAATCTTTGGACAAGAAGAAGGCATTGACCGATGAACAACAAAAGGCTAGGAGACAGCGAGAAAAATTAGTGCTGCGATGCGAGATGTGTCATGCCCGTGTACGTCGAGTTCAACTCGGTAAACACCTGCTCTCTCACTACCACTGCCGTGTCGCTGGATTAAATCCCTCAAGTTCCATTGCACGTCGCTTTATTCTGGAAAACATGGGCGATGTGGTACGCCAATGTCCATTCCAGTGCACTAGCTGTCGGTTTTATTGTAACACTGAGGATACCTTCCTGTTGCATTGGCGATCTGAGGTGCATACCTCTAGAGATAACGACTCAAACAGCAATCTGACGTGTGTCAGCTGTGACTTCTGGTGTGACACCAATCAAGCCATGGAGGTGCATCTCCTCAGCCTAGAGCATCGAGAAGCTGTCGCTATGATCAATGGTTCAGTACCTGTTGTCATTCGAAGACAGCTAATTCTAACTTGTAATACGTGCAATCGTCACTTTCGatacaattttcaacttcGAATGCACTCGAAGAACACTGGACATCCTCTGAGTGCAACCGCCACTGATGACTATCAACAGAGAATAGCTTGCAAACACTGCTCCCAAGTTTTTAGGTCTCTAGTAGCCCTTCAGCGACATCAACTGACCAGTCACACGTCCAAGGATGGGGTAGAACTGCCGACGCCTTATTTCTGTTCCTTCTGCTCGATCAACTTCGAGACTGCTCGAGACGCTGTGTTACATAGAAGAACCACTAGTCACAAGCAGACTGTCAAGGGGCACAAGTTCCAGGGAGTTGAGACGTTACAAAGGGATTGCGGTCACTGTGGGGAGAAGCTCCAGGATTTGGAGGCACTCAAACTACATTTGATTCAATCCCATCACGATCTTTGTCACAGatgcTCGCAGTGCGGTTCAGTTTTTCCGCTGTCCCAAGACCTCGCAAAGCACACGAAAAAACaagaatgcaaaaaaatattggatcaGAAATCGAATGCAAAGAGTCAAAAATTTTCGTGCACAACCTGTTGTGTGTTCGGCACAGACTCACAGTCCGAATTGATCTTCCATCAGATGCTCCATACAGGGAGTGTGCAACGGGATCCTGAAGAGCCGGGCTCCAGCAAAGCACCGGCCAAGTATCGCTGTCCTCTCTGTGATAGAGTACTACCGAGAGAATCCATGAGGAGCCACATCAGGATGCACACGGGAGAGAGGCCATTTGCCTGCGCTAAATGTCACAAGTGCTTCTCCAGAAGATCTAGTCTTCGTGTTCATGGGAAAGGATGCGAAGCGAGACTTCGCGATCGAGAGCAGAAGGTCAAGGTTCGGAAGAGGAATTATATCTGTGCAGAGTGCACCGAAGCCTTCTACACAAAaCACACACTTCGACAACACATGCTGCGTCATGCCGGCAAGAGCTACAAGTGCGGAGTTCCGGGCTGTCCAACTGTTCTCAGAACTGAGAATGAGCTGAAGAACCATCGCCGTCTCATCCACGAGACGGGCCCAAACGAGCGCAAATATCCATGTGACGATTGCAATTACGCAGCTAAAACGAGAACGGCACTACGTCGtCATCAAGAGAAACACAAAACCTCAACGAACCCGGCCCATTTAACATGTCCATATAAAGACTGCCCATTCGCGACTCAACTCTCGTCACATCTGAAGCGCCACATTCGCGTCCACACCGGCAAAAAGCCATACAAGTGTCGCCACTGTCCATATGCAAGCAACAATCTGGAGAATCTGCGAAAACACGTATTATCGACGAGTCGACATCCAGGAAAGATGATATACGAGTGTGACTCTTGCATCAAGAGTGGAAGCACCTTTACCACCAATTTCAGCAGAGAACTTCGAGCTCATTTGGTAGAGGTACATCCTCAAACCTATCCCACTGTGAATCATGCCAATAATTACGtctcatcaatatttaatgcGGACAATCAAGACCCGTGA
- Protein Sequence
- MEHYEDDEDTHYCIKCHVTVTGLDNYVRHRQSGCRPSEPKNEVMYPELLNADTFFNSLELRSSVKPKASSEALDDRNKKSRGDDKRRKRRRCQEIEESTSKEKLMTLSPGVTDLDDPTDHIGIPSLVGFPDIVTFGDKSSTVAPNKITAKIPDKKRNDDHRVWLNDSILEDLDGNKEVGSPREPLDSDADYDYRRGQESEAESDDDDSYSESEEEGEYESQAHTGGKWKPDQLLQEISTQNDDEVEQEDYRQDSPPSHTGGKWKPTDQKTEDGQVNVDEEEDEDDENDDDEEKDTRQPPPGHTRGKWIPGVSVVSGATTDSSYWCTPCSRRLASKLLYNRHLRSDLHARRSIQEIEGDIKLPRTVGPLLRRKTLSKRQQALALKSLDKKKALTDEQQKARRQREKLVLRCEMCHARVRRVQLGKHLLSHYHCRVAGLNPSSSIARRFILENMGDVVRQCPFQCTSCRFYCNTEDTFLLHWRSEVHTSRDNDSNSNLTCVSCDFWCDTNQAMEVHLLSLEHREAVAMINGSVPVVIRRQLILTCNTCNRHFRYNFQLRMHSKNTGHPLSATATDDYQQRIACKHCSQVFRSLVALQRHQLTSHTSKDGVELPTPYFCSFCSINFETARDAVLHRRTTSHKQTVKGHKFQGVETLQRDCGHCGEKLQDLEALKLHLIQSHHDLCHRCSQCGSVFPLSQDLAKHTKKQECKKILDQKSNAKSQKFSCTTCCVFGTDSQSELIFHQMLHTGSVQRDPEEPGSSKAPAKYRCPLCDRVLPRESMRSHIRMHTGERPFACAKCHKCFSRRSSLRVHGKGCEARLRDREQKVKVRKRNYICAECTEAFYTKHTLRQHMLRHAGKSYKCGVPGCPTVLRTENELKNHRRLIHETGPNERKYPCDDCNYAAKTRTALRRHQEKHKTSTNPAHLTCPYKDCPFATQLSSHLKRHIRVHTGKKPYKCRHCPYASNNLENLRKHVLSTSRHPGKMIYECDSCIKSGSTFTTNFSRELRAHLVEVHPQTYPTVNHANNYVSSIFNADNQDP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01274094;
- 90% Identity
- -
- 80% Identity
- -