Basic Information

Insect: Fopius arisanus
Gene Symbol: -
Assembly: GCA_000806365.1
Location: NW:1466066-1469273[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0014 0.092 12.5 0.4 7 23 104 120 95 120 0.91

2 7 6.3e-05 0.0042 16.7 0.3 2 23 137 158 137 158 0.98

3 7 0.0016 0.11 12.3 5.9 1 23 175 197 175 197 0.97

4 7 0.0022 0.15 11.8 0.6 3 23 206 226 205 226 0.96

5 7 5.8e-05 0.0039 16.8 0.3 2 23 285 306 284 306 0.94

6 7 9.6e-05 0.0065 16.1 2.6 3 23 314 334 312 334 0.98

7 7 0.00028 0.019 14.6 4.4 1 23 340 363 340 363 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0014	0.092	12.5	0.4	7	23	104	120	95	120	0.91
2	7	6.3e-05	0.0042	16.7	0.3	2	23	137	158	137	158	0.98
3	7	0.0016	0.11	12.3	5.9	1	23	175	197	175	197	0.97
4	7	0.0022	0.15	11.8	0.6	3	23	206	226	205	226	0.96
5	7	5.8e-05	0.0039	16.8	0.3	2	23	285	306	284	306	0.94
6	7	9.6e-05	0.0065	16.1	2.6	3	23	314	334	312	334	0.98
7	7	0.00028	0.019	14.6	4.4	1	23	340	363	340	363	0.97

Sequence Information

Coding Sequence: ATGGAGACAGAGTCGATAACTTTAGCCCCACCGACGATTCGTGTTGCATCGATAGTCCACCCCATCTCCAACGAGACAATTTCCATCGTAATTCCACTGTCAGCCCAGTTGACAACGGTGGAACGTGTCCAGGAATTTAATGATTCCGAGAGGGCAATTGACAAATCCGAGACAACTTCTGATTCCCAGTCAGTTGAAGTCAGCCTGTGCCCGACAACTCCAGCAGTTGCACTGAAACCACACCTAGCAGCTGCTCTCCAAAAGGCAGACAAGACCAAAGGCTGTCCCTTTCCCAATTGTTCACGATACGGACGTGCCTTCTCGAGGGCTCACGACCTTAAACGTCATATTGCGAGACACGAGACGAGAAAGGAGAGACTGTGTGAACCCTCGCAGACAGAGATTCGCACTTGTGGCCAGTGTGGAGAGAGTTTTATCAATGATCTGGTTCTCCAGCGACACATGAAAACTCATGCTAAAGCCGGAAGTGGTGAGGAAGGAGCCAGTGGTGAAGTCAAGAGCTATCCCTGCCATTTGTGCAAGAAGAGGTACACGCAGTTCTGTAAACTCCAGGCACATGTTTCCTCTCACGATAAGAAATCATCAGCAAATATCTGCGCCCTGTGCGGTCAGCAATgcgaaaatgaggaaaaactgGAGACACACATGAAGGAGCACACAACGAGTATCCTCGAGGCCCAAGAGGCTCTAGAGTCCAAAGCGGAACCCACCCCAGTGAAAATGGAAGAGGACGACGATGATGATTTTCTCCTCGAGGAGATGCTCCTTATAAACAAAGGCCCTCGCCTCCCAGTGAAATCCGAATCAACAACGACTTCAGATGGAAAAATCCGGTGCGATTACTGCGCGAAGACCTTCAAGACGAAGTGGACCCTGAGCTCTCACGTGGCTGCCCATGAGGGCCGCTTTCAGTTCGGCTGCTCCAGATGTGGAAAGAAGTTCGTCAGGAAGAGCCATTACGATGGGCATGTGCGTTCACACGAAGCCGCGAGGCCCTACGTCTGTGAACAATGTGGAAAAACATTTAAGGAATTAAAACATCGTCGTGAACACACGAAGAGAAAACATCCAAGCAATCGAAATGACGTGCAAAATCTCCTGGACAGCATCAGTGCTTACGTTGCTGAAGAGTCATCGATGGAGCAAACGAAATTTACACTTCTCATGCCTGTGAACTTTCCCGCATAA
Protein Sequence: METESITLAPPTIRVASIVHPISNETISIVIPLSAQLTTVERVQEFNDSERAIDKSETTSDSQSVEVSLCPTTPAVALKPHLAAALQKADKTKGCPFPNCSRYGRAFSRAHDLKRHIARHETRKERLCEPSQTEIRTCGQCGESFINDLVLQRHMKTHAKAGSGEEGASGEVKSYPCHLCKKRYTQFCKLQAHVSSHDKKSSANICALCGQQCENEEKLETHMKEHTTSILEAQEALESKAEPTPVKMEEDDDDDFLLEEMLLINKGPRLPVKSESTTTSDGKIRCDYCAKTFKTKWTLSSHVAAHEGRFQFGCSRCGKKFVRKSHYDGHVRSHEAARPYVCEQCGKTFKELKHRREHTKRKHPSNRNDVQNLLDSISAYVAEESSMEQTKFTLLMPVNFPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01273331;
90% Identity: -
80% Identity: -