Basic Information

Insect: Fopius arisanus
Gene Symbol: prdm10
Assembly: GCA_000806365.1
Location: NW:416306-421762[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.5e-07 1.7e-05 24.2 0.4 1 23 529 551 529 551 0.98

2 13 0.0016 0.11 12.3 1.9 1 23 558 581 558 581 0.97

3 13 0.0074 0.51 10.1 0.4 1 23 597 619 597 619 0.94

4 13 2.3 1.5e+02 2.3 4.5 2 23 633 654 632 654 0.96

5 13 0.00063 0.042 13.5 3.9 1 23 675 697 675 697 0.97

6 13 0.0074 0.5 10.2 2.5 2 23 706 727 705 727 0.96

7 13 0.025 1.7 8.5 1.2 1 23 734 756 734 756 0.98

8 13 0.00037 0.025 14.2 5.1 1 23 763 785 763 786 0.96

9 13 0.0026 0.18 11.6 3.0 1 23 791 813 791 813 0.98

10 13 0.00015 0.0099 15.5 4.4 1 23 819 842 819 842 0.96

11 13 0.0012 0.08 12.7 1.7 1 23 898 921 898 921 0.97

12 13 9.1e-05 0.0062 16.2 2.0 1 23 943 966 943 966 0.95

13 13 0.0011 0.073 12.8 3.4 2 23 999 1021 998 1021 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.5e-07	1.7e-05	24.2	0.4	1	23	529	551	529	551	0.98
2	13	0.0016	0.11	12.3	1.9	1	23	558	581	558	581	0.97
3	13	0.0074	0.51	10.1	0.4	1	23	597	619	597	619	0.94
4	13	2.3	1.5e+02	2.3	4.5	2	23	633	654	632	654	0.96
5	13	0.00063	0.042	13.5	3.9	1	23	675	697	675	697	0.97
6	13	0.0074	0.5	10.2	2.5	2	23	706	727	705	727	0.96
7	13	0.025	1.7	8.5	1.2	1	23	734	756	734	756	0.98
8	13	0.00037	0.025	14.2	5.1	1	23	763	785	763	786	0.96
9	13	0.0026	0.18	11.6	3.0	1	23	791	813	791	813	0.98
10	13	0.00015	0.0099	15.5	4.4	1	23	819	842	819	842	0.96
11	13	0.0012	0.08	12.7	1.7	1	23	898	921	898	921	0.97
12	13	9.1e-05	0.0062	16.2	2.0	1	23	943	966	943	966	0.95
13	13	0.0011	0.073	12.8	3.4	2	23	999	1021	998	1021	0.96

Sequence Information

Coding Sequence: ATGGAGGATAGGGGCCCTCACGAGGGGGCCCCTGGACCCCTGGATCACCCCCTGCTGGAAAAACCTCGGGATCTGCCAGAAATTTGGACGTCGAACCCCACAACTTCCCTCGACCACCGAAAAACCCCGAATCGCTTGCTCTTCCTGACAGTCGAGTTCTCAGAGGACCAGTCAAAGGACTTCAACCGTATGTTCCCATACGAGCAAGTCTCATTCTCCCCCCGAGCAACATCCCCTTTAGATTTTGAGCATCGAGTGAGTCCCCTGGACCCCAACATGAGCTCCACAGCTCGATATTCCCCAACTCCAGTGCAACTGCCTTCACTGCCCTTCCAAAATCCTCAGGTTGTCCTCCAGAGTCCCCCATCACCCCTGATCCAACCACAAGAGACCAATCAACGTGGCACCATGAATTTCATCGAGACCCAGGGCAGTCCTCCAAATATATCATCAAGTGAAGCAGAAAGTGTCTCTGATTTCGTGAGTGGAGAGAGCCAGCAGGGGATATCCCACGTGAACGGGGAATTAATTCTGATGCAGGAGCCCGCAGAAGAGTTAGAGCATTCACCACCGCCCCTGATGCTGTCAGGGCTGACAAGCACGGACTTCGCTCTGGCCCGTGACTTCCTAGTGATGAACGATGACCAATTAACCGTGATAACCCCCCTGAGCTCCTCCTCAGAGGACCCTGCAGTGGTCCCCGAGCTCTCGAGCCTTCCTGACCCTGAAAAAGACATGCTGTCTGACTCCATCACCTACCCCCCTACCCTGCCCCCGAAGAAACCACTAACGGAGGAAGAAAATCTGCAGTCAGCAACTGACATCCCTCAAAAATCCACAAACCGACAGATAAACGATAAGAAAACCTTCTGGTGCGATGACTGCGACACAATTTCACTGAGGGACGGCGAGTGCACCTGTCACAACGTGCAGACAATTGCCGACCAGCCAGTGCCTTCTCGAGCAGTGGCGACCCTCCCAGGTTCCCACTTGTCcctcagaaaattgaattcccctCAAGGGGCGCTTGGAGTATTTGCAAAGAGAAACATCTGCAGAAGAACGCAGTTTGGTCCAATTGAGGGTGTCCCCTGCGAATACGATGGCAAGGGTTTCAGTCACGATGCTCTGCCCCTCCTCTACGAGACAGACAGAggtgaattcataaaaattgatgtgtCAAACGAACACTCGTCGAACTGGATGCGTTTTGTGCGCCCAGCGCAGAATTACAGAGAGCAAAACCTGATTATTTCTCAGCAGAAGGAagggataatttttctgacGACGAGAAACATCTCCCCCAGGGAGGAGCTACGCGCTGGACCCAGTCCAGATTACGCGACCAGAAGGGGTCTACCCCTCCTGGAGGACCCGAAGACCCAGCAGTTCACGTCTGGTCACCTCGAGAGCTTCTCATCCCTCGATTCCCCgttcaatgattattcaaatcgTCCTCCCGACTTGCAGGTTTCGTCGAGCCTGAACTCCATATCAGAACATCCCCAACCCCAGGAGCAAGCGAAACGAACGAGGATGGGAAAGAGCAAGCTCCTGAAGACGATGGACGAGCAGTCTTTGCTCTACAAGTGTTCCCAGTGCCCCAAAGCCTTCCCTCGAAACGACGCCCTGAAAAAGCACCTGCTCTCTCACTCAGGCTCGACATCTGCCTACGAGTGTCCGACCTGTGGTGAGAATTTTCTCCACTCGTACAATCGCAGTCGTCAcattaaaatattccacaGCAACGACGCAAAGGAGAAGGAGAACTCGAGGAAGAGTTCTGAGTACAAATGCTCCAAGTGCAGTTTGATATTTATGAAGGCATCACTTCTGGAGCTGCACAGCGAGCttcataataaaaacaacaacGAATCCCTTGATGAGAAGAGAACACGATGTCCCCAGTGCAAGCACTTGACGAAGAGCCACCTGGATCTGGTGAAACACGTGTCAAAGCATGGCCACAAGTACCAGAAGCACAAGCTAACTAAAACATCGAAAGTAACAGTTTTATCATCCCACAAATGCACGATGTGCTACAAGCGTTTTGCAACTAAAGTGCGTCTGCAGCAGCACTACCTGGTGCACGGTGCCGAGGACCAAAAGCCACTGCCATGCAACGTATGCTTCAAGCGATTCATGAACAACTCGGCATTGTCCTGTCACCTGAAGACTCATCGAGAGGACAAGCAGATATTCGAGTGTCCAATGTGttgtaaattattcaatcaagtTCTTCAGCTGAAGGATCACATTGAAACCCACAGGAACGACGACAAGACGTTCACCTGCTCTCACTGTCCTCGAACATTCACCAAATACTCAGTAATAAGGAAACACATAAGGGCCCATCACTGCGAGCGCAAGCACAAGTGTCAATTCTGCGTCAAACGTTTTCCAACTATTGATAAATTAAGAATGCACCTGCTCCGTCACTCTGATCACAGGCAATTTCACTGCGCTAATTGTGAGAAGCAGTTCAAGAGGAAGGACAAGCTGAAGGAACACATGACAAGAATGCACAGCTCCCAGAGGATGGAGAGAATGGAGAGACTGGAAAGGACGGAGAGGATGGAGAGTGCAAGAGAGCAGAGTGACGTTGCTATTGATAATGGTGCAGGGAACCAGGGTAATCAGTCTAGAAAATTTATACCAAAGGTCAATCCCACGGATTACAACAGATTCGTGTACAAGTGCCATCAGTGTCTGGTGGGCTTCAAGCGCAGGGGCATGCTGGTTAATCATCTAGCAAAGAGACATCCTGAGGTGCCTCCAGAGTCCATACCAGAGTTGAATCTACCTATTTTGAGGCAGACGAGGGATTACTACTGTCAGTACTGTGATAAGGTTTACAAGAGCAGCTCCAAGAGGAAGGCGCATATCGTGAAAAATCATCCTGGTGCTGCTCTCCCACCAAGCAACAGACAGAAGGAAATGATGGGGGACTCAACGTACAGTCAGGCTGCTGGAAGTGTCACCACGACTCCCCAGAGTTGTCAATGGTGTCACAAGCAGTATGCCAGCAAGGCAAAACTCCTGCAGcatcagagaaaaaaacacTCAACCCTCATGGAACCTGCTGATCAAGTCCCTAGAGCCAGAAATCGACAACAGGCGCAGCTTCAAGTGCAGCAGGATCTCATCGACAATAACTTTGGCAATAATAACTtcgaattcattgaaattgctCCGGTCTGTGACATTGGTGAGTTGAGGTTTAAACCCaggattattaaaattggGAGTAATGGGGATTTCATTGATGTCGAGGGGGGCATTGATCCACTCGTTAATCAGCAATTTGTACGTGTGCGAGACATACGTTGA
Protein Sequence: MEDRGPHEGAPGPLDHPLLEKPRDLPEIWTSNPTTSLDHRKTPNRLLFLTVEFSEDQSKDFNRMFPYEQVSFSPRATSPLDFEHRVSPLDPNMSSTARYSPTPVQLPSLPFQNPQVVLQSPPSPLIQPQETNQRGTMNFIETQGSPPNISSSEAESVSDFVSGESQQGISHVNGELILMQEPAEELEHSPPPLMLSGLTSTDFALARDFLVMNDDQLTVITPLSSSSEDPAVVPELSSLPDPEKDMLSDSITYPPTLPPKKPLTEEENLQSATDIPQKSTNRQINDKKTFWCDDCDTISLRDGECTCHNVQTIADQPVPSRAVATLPGSHLSLRKLNSPQGALGVFAKRNICRRTQFGPIEGVPCEYDGKGFSHDALPLLYETDRGEFIKIDVSNEHSSNWMRFVRPAQNYREQNLIISQQKEGIIFLTTRNISPREELRAGPSPDYATRRGLPLLEDPKTQQFTSGHLESFSSLDSPFNDYSNRPPDLQVSSSLNSISEHPQPQEQAKRTRMGKSKLLKTMDEQSLLYKCSQCPKAFPRNDALKKHLLSHSGSTSAYECPTCGENFLHSYNRSRHIKIFHSNDAKEKENSRKSSEYKCSKCSLIFMKASLLELHSELHNKNNNESLDEKRTRCPQCKHLTKSHLDLVKHVSKHGHKYQKHKLTKTSKVTVLSSHKCTMCYKRFATKVRLQQHYLVHGAEDQKPLPCNVCFKRFMNNSALSCHLKTHREDKQIFECPMCCKLFNQVLQLKDHIETHRNDDKTFTCSHCPRTFTKYSVIRKHIRAHHCERKHKCQFCVKRFPTIDKLRMHLLRHSDHRQFHCANCEKQFKRKDKLKEHMTRMHSSQRMERMERLERTERMESAREQSDVAIDNGAGNQGNQSRKFIPKVNPTDYNRFVYKCHQCLVGFKRRGMLVNHLAKRHPEVPPESIPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIVKNHPGAALPPSNRQKEMMGDSTYSQAAGSVTTTPQSCQWCHKQYASKAKLLQHQRKKHSTLMEPADQVPRARNRQQAQLQVQQDLIDNNFGNNNFEFIEIAPVCDIGELRFKPRIIKIGSNGDFIDVEGGIDPLVNQQFVRVRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -