Basic Information

Insect: Fopius arisanus
Gene Symbol: -
Assembly: GCA_000806365.1
Location: NW:153996-157153[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0085 0.57 10.0 0.1 3 23 118 139 117 140 0.95

2 14 0.0014 0.093 12.5 1.4 2 23 144 166 143 166 0.94

3 14 0.00016 0.011 15.4 0.5 3 23 240 260 239 260 0.98

4 14 0.026 1.8 8.4 1.4 2 23 266 288 265 288 0.94

5 14 0.011 0.72 9.7 5.1 1 23 324 347 324 347 0.97

6 14 1.2 78 3.3 0.3 2 20 361 379 360 382 0.77

7 14 5.1e-06 0.00035 20.1 0.4 1 23 390 413 390 413 0.96

8 14 8.2e-06 0.00056 19.5 4.0 1 23 419 441 419 441 0.98

9 14 0.0066 0.45 10.3 2.3 2 23 445 467 444 467 0.94

10 14 1.3e-05 0.00089 18.8 1.4 1 23 477 499 477 499 0.98

11 14 0.00052 0.035 13.8 2.0 2 23 506 527 505 527 0.97

12 14 0.0037 0.25 11.1 5.8 1 23 532 554 532 554 0.97

13 14 7.4e-05 0.005 16.5 1.1 1 23 562 584 562 584 0.98

14 14 4.1e-06 0.00028 20.4 0.6 1 23 590 613 590 613 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0085	0.57	10.0	0.1	3	23	118	139	117	140	0.95
2	14	0.0014	0.093	12.5	1.4	2	23	144	166	143	166	0.94
3	14	0.00016	0.011	15.4	0.5	3	23	240	260	239	260	0.98
4	14	0.026	1.8	8.4	1.4	2	23	266	288	265	288	0.94
5	14	0.011	0.72	9.7	5.1	1	23	324	347	324	347	0.97
6	14	1.2	78	3.3	0.3	2	20	361	379	360	382	0.77
7	14	5.1e-06	0.00035	20.1	0.4	1	23	390	413	390	413	0.96
8	14	8.2e-06	0.00056	19.5	4.0	1	23	419	441	419	441	0.98
9	14	0.0066	0.45	10.3	2.3	2	23	445	467	444	467	0.94
10	14	1.3e-05	0.00089	18.8	1.4	1	23	477	499	477	499	0.98
11	14	0.00052	0.035	13.8	2.0	2	23	506	527	505	527	0.97
12	14	0.0037	0.25	11.1	5.8	1	23	532	554	532	554	0.97
13	14	7.4e-05	0.005	16.5	1.1	1	23	562	584	562	584	0.98
14	14	4.1e-06	0.00028	20.4	0.6	1	23	590	613	590	613	0.95

Sequence Information

Coding Sequence: ATGGACTCGAAAGTTGATGCTAGCAAACCCATAAAAATCTGTCGATTATGTTTAAAGACTGGTCAGAGTTATCGTTCACTGTTCGAAGAGAAGAATAAGATAGCCGAAAAAGTCAGCAAGTGTTTACCAATTCTGgTGAATCCAAACGATGACCTTCCTAGTCATATTTGTCCCCTGTGCCTACGTTCCTTAAACATCAGCTACAAATTGTTAATCCAAGCAATAGAAACCGATGGAAAGCTCCGAAAGCAACTGTCAGAGTCTCGGGCCCAGAGGCTCATCCTGGAGCCACGAGGAACTGTCTCTATGCCTTTAAAATCCCAGCAGATGGAAGCAGGTAATCCAGGTATCTGTGGCATCTGCGAGATTCGTTTCGAGGATGCAGAAGCCTTCGACAGCCACATGGAAATGTTTCACCACTCGAAATGGGTCTGTAATCTTTGTGAGACTGACTTCACGACCTCAGAGGAACTTCTCCAGCATAAGCACAAGACACATTACGACAACATGGAGTGCACTGAAGCTCCAGAGAACTGCATAGACGAGGGGATAATCGATATCAAGGAGGAGAGAATTACTTCGGCCTCTGAACACTCGGATGCTGAGGAGTTTTTTCCTGCGGAAGCTGAGAACGGCAAAAAACGCAGGAAGGAGAAGCAAAAGGTGGATGAAGAGATGAGGGAAAAGCCCGTGAAGGAGAGGAGGACCCGGGAGATTTGTAAGACATGTGGAATTACCCTGGACAGGGAGACATCACTCAGAGAACACATGAAAATGCACGAACCCTACGACGTAGAGTGTGCAGAGTGTCAGGACAAATTCACCACAGCTTATGATTTCTGTGTGCACAAACGTGATTTTCATAACAGCCATCCCGGGCGGCCCATCAAGTTCTTCTGCAGGCTTTGCAACAGAATGATGTGGGACATAAGAGCTCTTAAAGTTCATGCCAATTGTAAGAGGCCCAGACATACGTGCAAGTACTGTCTCGAGAATTTTTGTGTTAAGAACCTACTGAGGCTGCATTTGAATAAGGAACATCGTCAAGCTATGATGGAGGATGAGGCTATAGAGAAGATGAGCTGTGCGTACTGTCAGAAGCTGTTTGTCGATAAGAAGATCTACTACGATCATGTTTATCTGCACAGTCGATCGCTCGTCTATCGATATCAATgcaaattttgtgaaaaagaCTTCGCCAGTGCGTCGTCGTTGAAAAATCACGTTGAATCGGCCCACGATAAAATCCCGAAATACGAGTGTCGGACgtgtaagaaaaaattctacaacaAGAAGAATTTGCAAACACATGAAAGAATACACTTGAAACTTCATTGTAAGCGTTgcaagaaaaaattcgaaactgTTGAACTCGTTAATCAACACATGAAGGACGTGCATGGCGTACCGTTGAAGATAAAACGGTTGTACTCCTGTCCGCAATGCGACAGGAAGTTCACCAGGCGGAGTGTCATGGAGGACCACAAAAACACTCACAGTGGAAAAACTCCCCAGACTTGTACCATttgtcacaaaaaattcagaACGTATGCAGCACGTTGGGCGCACGTACAGAGACATGGGTCTAACGGATTTTTCTGTGAttattgccaaaaaaaatttctCAATAAGAGACACATGAAATCCCACATAATGAGCCATCGTCCTCCTGAGGAGTGGGAATACATATGTGAAGTATGTGATGCCCGTTTTCCTCAGAAATTTCGACTAACGAATCACAAGAGAAAACAcacgggagaaaaaaaatacttgtgcGATATATGTGGCTCGAAATTCGGCCAGAAATCCAATCTCGATAAACACATGAGGAATTTACATATTGCCCCAGAGCCTCAGGAATCCCGGTAA
Protein Sequence: MDSKVDASKPIKICRLCLKTGQSYRSLFEEKNKIAEKVSKCLPILVNPNDDLPSHICPLCLRSLNISYKLLIQAIETDGKLRKQLSESRAQRLILEPRGTVSMPLKSQQMEAGNPGICGICEIRFEDAEAFDSHMEMFHHSKWVCNLCETDFTTSEELLQHKHKTHYDNMECTEAPENCIDEGIIDIKEERITSASEHSDAEEFFPAEAENGKKRRKEKQKVDEEMREKPVKERRTREICKTCGITLDRETSLREHMKMHEPYDVECAECQDKFTTAYDFCVHKRDFHNSHPGRPIKFFCRLCNRMMWDIRALKVHANCKRPRHTCKYCLENFCVKNLLRLHLNKEHRQAMMEDEAIEKMSCAYCQKLFVDKKIYYDHVYLHSRSLVYRYQCKFCEKDFASASSLKNHVESAHDKIPKYECRTCKKKFYNKKNLQTHERIHLKLHCKRCKKKFETVELVNQHMKDVHGVPLKIKRLYSCPQCDRKFTRRSVMEDHKNTHSGKTPQTCTICHKKFRTYAARWAHVQRHGSNGFFCDYCQKKFLNKRHMKSHIMSHRPPEEWEYICEVCDARFPQKFRLTNHKRKHTGEKKYLCDICGSKFGQKSNLDKHMRNLHIAPEPQESR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -