Fari004151.1
Basic Information
- Insect
- Fopius arisanus
- Gene Symbol
- -
- Assembly
- GCA_000806365.1
- Location
- NW:878522-881812[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.027 1.8 8.4 2.2 1 20 168 187 168 190 0.96 2 13 0.0049 0.33 10.7 3.9 1 23 196 219 196 219 0.93 3 13 1.4e-06 9.6e-05 21.9 1.1 1 23 226 248 226 248 0.98 4 13 4.6e-07 3.1e-05 23.4 0.8 1 23 371 393 371 393 0.98 5 13 0.0041 0.28 11.0 1.6 2 21 409 428 408 429 0.92 6 13 0.00012 0.0083 15.8 2.6 1 20 452 471 452 474 0.92 7 13 0.0034 0.23 11.2 0.8 1 23 479 502 479 502 0.95 8 13 7.1e-07 4.8e-05 22.8 2.0 1 23 508 530 508 530 0.99 9 13 7.6e-05 0.0052 16.4 4.2 1 23 537 559 537 559 0.99 10 13 0.00021 0.014 15.0 0.4 3 23 567 587 565 587 0.97 11 13 0.00024 0.016 14.8 0.2 1 23 593 616 593 616 0.96 12 13 0.38 26 4.8 0.1 1 23 630 652 630 652 0.92 13 13 0.93 63 3.5 0.0 2 23 795 816 794 816 0.94
Sequence Information
- Coding Sequence
- ATGGAACGATCGGACAATGAGCAATACGTAACTTACTCTTTGTCATCCGTCCATGACATTGAGCAGGCGATAATTTCTCATGAGGAAGTGTGTGAACCAGCGGAATCACTCATGAACCACGAGAGCCAAGAGGAGATTCTCTGTGAGAAATCCTCTGACGAGGACGACAACTCTGTTGTTTACCCGATGTACATAAAACAAGAGGGTACCCCTCAGTATACATCCGGTGATGATGAATCAATGGCGGTGGAGGCTTTGCGTCAATTAGGGGGAATGTACCCTCAATTTGACGGTAAAAAGACATCGAATTACAAAGTAATGAACACTTTCAAAGATTCTgagattgatgaaaataatctcTCTCCTGGTGATAACAATCCTTTTGATTacactgataaaaatattggagaagaTGGGGAGAGTAAGAATTCATGTCCAGAGAGAGAATCAGAGCCAGAACCAGAATCAGAAGGGGTGTATTGTAGGAAGAATTCTGGTAAATTTTCATGTCAAACGTGCGGTGATAAATTTGAGAGAAGATTAGACTTGAACAATCACATGGTTTGCCATCAGGTAGATCGTCCCCATGCGTGCAGAACTTGTGGCAATCTCTTCCGCTCTAAATCAAGTCTGCACACCCACATGTCCCAAGTTCAtaataatcaagaaaaatgTCACAAGTGTTCGATCTGTGGGGCAAATTTTCAGAGACCATCATCTCTATCCAATCACATGAAAATCCATACGTACGTGGCAGGAAGGGCTTTGATGTCCCAATCGGATAATTTGTCCGAGTCGTCATCAGTAGTCCCTCAGCAAAACTATCAAGTAGCACAGGTAAATTGGCAGAGTTACGCATTTCAGAGCGATCAGAGTGATCAGAGTGGAGCTCTGGGACAAGATAAATTGGACCTCCAGGAGTTTACGGTATTGCCGAATGGAGAGGTCGCACAATTTGAATATCCTCACAATTACAATATCAGTCTTGTATCCAATAGCTTTCCAACAAATTCCGAGACTCTTGTCAAAGCAGAGAGTCTACCCTTCGatagccaaaaaaaaacttgccAATTTGTAACAGTTCAAGTTACAGATCAGAAACAGCCACAATTTACCTGCAATAATTGTGGTGCTACTTTCTCAAGAGCAACATCACTGACTtctcatcaaaaaattcataatcagAGGGCATTAATACCCGCTAAATCATGGACAATGCCCATAGAGTGTCAATTCTGCGATAAACAATTCCAGGACAACAATCATCTGGCTTCTCATCATACAACGTGCGCCAAAAAATTGATGCTCAATAACGGAGGAGATAATGCAaatgggaatggaaaatggtCGAAGCATGCTTGCAACgagtgtggaaaaaaatttacaaccAAGCAGAAGATGTTTCGACATCAATGGatacacagaaaaaaaactcactcTTGCGAGGTATGCGGTGGACAATTTGAGAAGCAGAATCAACTGGACAAGCACAGATTATCAGCACATCCAGGTATATCTCCGTTCACGTGTTCCGAATGTGGTAAATGTTTTGTATCGCGACAGGGCTTGTGGGAACATACAAGGACACACGCCGACGGCCCAGCACATTTTCAATGCGACACTTGTTCAAAGACTTTTTCATCGAGACAGGGTTATTTGATACACCACAGGACCCACACGGGTGAGCGACCATATGGCTGTAAATTTTGCTGGAAGGCATTTCGAGATGGTGGAACATTGAGAAAGCACGAGAGAATTCATACGGGGGAGAGACCACATGTATGTCCTCTGTGCTCAAGAGCATTCAATCAGAAGGTTGTCCTGAGGGAGCATGTCAGGTGGGTTCATGCCGCTGGAAAAAATGACACAGAAGTCGTTGGGCCACCATTCCCCTGTCCACTTTGTGGTGCTCTCAATCAAGATCGAGATGAACTCTGCGCTCATATCGTTAAACATTCAGATCAGATGATTGCTGAGGCTAAGGCGAGAACCACTATAGATCCCATGAGCATCAAGAGTGTTAAGAAGAAAGCAAATGCCAAGCGCAAGGCCAAGACCGATCTGTCTAAGCAAAAAATCGCCAAGGTACAAGTTGAGGGACATTTGATACAGAAGGATGGTGAGACCGTTCTTCTTGTTTCTACTGGAGAACAACCAAgggaagaaggagaaaaacaaattatttcacaagAACATCTCAATGATGTCCTGAGGGTACAGTTTATTGATGATCGACAGAGCACTCTGCAGATCATTAGCAAGGAGAATGAAGCTCTGCCTGTATTAACCCTTCCCAATGAAGATGACGGCTTTGCGGGGCAAGTCGAGGCCACTGATGAGGGAGTCTATCAGGAGAGCGATGATGAACCTGAAATGGATCTTATCTGTGGCATATGCGGTGACGAATTCGGTGATAAGAATATTCTTATGGAGcatgtgaaaattcatatttaa
- Protein Sequence
- MERSDNEQYVTYSLSSVHDIEQAIISHEEVCEPAESLMNHESQEEILCEKSSDEDDNSVVYPMYIKQEGTPQYTSGDDESMAVEALRQLGGMYPQFDGKKTSNYKVMNTFKDSEIDENNLSPGDNNPFDYTDKNIGEDGESKNSCPERESEPEPESEGVYCRKNSGKFSCQTCGDKFERRLDLNNHMVCHQVDRPHACRTCGNLFRSKSSLHTHMSQVHNNQEKCHKCSICGANFQRPSSLSNHMKIHTYVAGRALMSQSDNLSESSSVVPQQNYQVAQVNWQSYAFQSDQSDQSGALGQDKLDLQEFTVLPNGEVAQFEYPHNYNISLVSNSFPTNSETLVKAESLPFDSQKKTCQFVTVQVTDQKQPQFTCNNCGATFSRATSLTSHQKIHNQRALIPAKSWTMPIECQFCDKQFQDNNHLASHHTTCAKKLMLNNGGDNANGNGKWSKHACNECGKKFTTKQKMFRHQWIHRKKTHSCEVCGGQFEKQNQLDKHRLSAHPGISPFTCSECGKCFVSRQGLWEHTRTHADGPAHFQCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNDTEVVGPPFPCPLCGALNQDRDELCAHIVKHSDQMIAEAKARTTIDPMSIKSVKKKANAKRKAKTDLSKQKIAKVQVEGHLIQKDGETVLLVSTGEQPREEGEKQIISQEHLNDVLRVQFIDDRQSTLQIISKENEALPVLTLPNEDDGFAGQVEATDEGVYQESDDEPEMDLICGICGDEFGDKNILMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -