Fari006234.1
Basic Information
- Insect
- Fopius arisanus
- Gene Symbol
- -
- Assembly
- GCA_000806365.1
- Location
- NW:150908-153982[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.12 8.5 6.3 0.1 2 23 110 132 109 132 0.91 2 15 0.13 8.9 6.2 1.2 2 23 137 159 136 159 0.93 3 15 0.3 20 5.1 0.0 2 23 239 260 238 260 0.96 4 15 0.00064 0.044 13.5 0.5 2 23 266 288 265 288 0.94 5 15 1 68 3.4 0.7 3 19 300 316 298 318 0.93 6 15 0.00014 0.0094 15.6 1.6 2 23 325 347 324 347 0.97 7 15 9.5e-07 6.4e-05 22.4 2.0 1 23 360 382 360 382 0.98 8 15 2e-05 0.0013 18.3 0.9 1 23 390 413 390 413 0.97 9 15 0.0084 0.57 10.0 1.0 1 23 419 441 419 441 0.97 10 15 0.016 1.1 9.1 0.4 2 23 445 467 444 467 0.94 11 15 0.00038 0.026 14.2 2.0 1 23 477 499 477 499 0.98 12 15 0.00077 0.052 13.3 1.3 1 23 505 527 505 527 0.96 13 15 3.5e-06 0.00024 20.6 5.0 1 23 532 554 532 554 0.98 14 15 1.6e-06 0.00011 21.7 2.4 1 23 562 584 562 584 0.98 15 15 0.00029 0.02 14.6 0.9 1 23 590 613 590 613 0.96
Sequence Information
- Coding Sequence
- atggattcaaaCATCACTGAAGATGTGTGTAGATTATGCGCAAATCGGGGAAAGCgatatcattcaattttcgatttgGAATCCAATTCAATAGCTGTGAAAATCAACAACTGTTTACCAATAGAGATTagacaaaatgataaattgccGTCTCACATTTGCTCTGCATGTCTGGAGGCTCTGGACATAAGCGATAAATTAAGAGCACAGTCTCTGGTGGCTGATGAGTTATTGAGACAGCAGTTGAAATTAAtcttaattgataatattaaaCAGGAGAAAGATGTGGATGATGACTCTCAGCAAATTGACACGACTGAGCGACTGTATTGTGGTATATGtgagatcaatttttatagCATGACTGATTTCGATGATCACATGACGGCATCGCACTCTTCACAATGGATTTGTAATCTTTGTTATGAAGATTGCCAAACGTCGGAGGATCTACTTCGACATAAATATAAAGAACATTATGGAATTGTTGATCAGAATAAAGAAACTGAGACTGATCTTCCTAAAGAAGATGATGTTCATTCTCCTGAAAAAGCTACGACTGATGATCAAGGAGAAGCAGAAGAGTCCGATGGCTCGGCGAATATTTCAGATCATTACGTCAATGTTAATGAGGCCATTGACATCAAAGATGAAGACCCACAGAATTCTCAGGGCATTGAGGTACATGCACAATcatcaaaaaggaaaaatattgtttgcaCAGTCTGTGGTGTAGAAATCGCAACGGAGGAATTGATGTCGCTTCACGTCAAAATGCATGAGCCAAGACAGATTTCTTGTCAAACTTGCTTCCGAGAGTTCTCATCCCCCTATGATCTTTTCATTCATAAGCAAAATGTACATAAAGTTTTTATTGATCAGAAGATGAAGTGGTTCTGCGAGAAGTGCGAGAGATTTACAGCGAGTGTTCAGTTTCTGAGACGACACAAGTTTTGCGCGAAAATTAAGCAGAAATGCAAGTATTGTGGccaggaatttttgaagaaatctgAGTTGCAGATTCATCAGAATaaaaatcattatgaaGATGTGATGAAGGATCCAGAGTCGGAGAAGTTCGAATGTGAGACGTGTGGGAAGAGCTACGTGCAAAAAGCTAATTATAATTCCCATATTCGGcACCATCAAGCCATAGATGAAGGCAAATTCACATGTCCCACCTGCGACAAAAAATTCCGAACCTCTACGATATTGAAGTCTCACATCGAAATGTTGCATGAGAAAAAACTTAAATATATATGTGATATTTGTTCCAAGCGCTTCTGGGGTTCGAGGAGTATGCAAGAACACAGAAAAAGGCATGCGAATCAGACGTGTCAGGAGTGTGGAGAGAAGTTCGATAACACTCGAATTCTTGCTACACATTTACTGAAACAGCACAATATTTCCGTACCCCATGCCGGGAAATTCTCTTGCAAAATCTGTGGCAAAAAGTTCCTCAAGTTGAGACTCTTGCAGGATCACAAAAATACTCATACTGGAACGAGACCTCACGTTTGTGACATGTGCCAGAAGACTTTCAGAACGTATGCGGCAAAATGGGCCCACGAGCAGAGGCACAAGAATGAAGGTTTCGTTTGTGATTATTGCAAACATAAGTTCACGGATAAAAACAACTTGAGGAGACATATCACTCGGCATTTGCCTCCAGAAGAATGGAGATATCAGTGTGAAATATGCGATCTGAAATTCCAAAGACACTCCAATTTACAGCGTCACGTAGAGAGACACAAAGCTATTCATCCATATCCATGCAATATCTGTGAATTTCGATTTCCCAGTAAAAGAACCATGACAGCCCACAGAAATCAGAGCCACAGAGAAATACTTGGGTTCGATCGTCTTCCCTGTGTTTAA
- Protein Sequence
- MDSNITEDVCRLCANRGKRYHSIFDLESNSIAVKINNCLPIEIRQNDKLPSHICSACLEALDISDKLRAQSLVADELLRQQLKLILIDNIKQEKDVDDDSQQIDTTERLYCGICEINFYSMTDFDDHMTASHSSQWICNLCYEDCQTSEDLLRHKYKEHYGIVDQNKETETDLPKEDDVHSPEKATTDDQGEAEESDGSANISDHYVNVNEAIDIKDEDPQNSQGIEVHAQSSKRKNIVCTVCGVEIATEELMSLHVKMHEPRQISCQTCFREFSSPYDLFIHKQNVHKVFIDQKMKWFCEKCERFTASVQFLRRHKFCAKIKQKCKYCGQEFLKKSELQIHQNKNHYEDVMKDPESEKFECETCGKSYVQKANYNSHIRHHQAIDEGKFTCPTCDKKFRTSTILKSHIEMLHEKKLKYICDICSKRFWGSRSMQEHRKRHANQTCQECGEKFDNTRILATHLLKQHNISVPHAGKFSCKICGKKFLKLRLLQDHKNTHTGTRPHVCDMCQKTFRTYAAKWAHEQRHKNEGFVCDYCKHKFTDKNNLRRHITRHLPPEEWRYQCEICDLKFQRHSNLQRHVERHKAIHPYPCNICEFRFPSKRTMTAHRNQSHREILGFDRLPCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -