Basic Information

Insect: Fopius arisanus
Gene Symbol: -
Assembly: GCA_000806365.1
Location: NW:641082-644312[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.02 1.4 8.8 0.4 6 21 12 27 6 28 0.86

2 14 0.73 50 3.9 0.0 2 20 34 52 33 53 0.92

3 14 1.5 1e+02 2.9 0.2 1 12 222 233 222 242 0.88

4 14 0.0038 0.26 11.1 2.5 1 21 343 363 343 364 0.94

5 14 0.00095 0.064 13.0 2.3 3 23 370 390 369 390 0.97

6 14 2.2e-05 0.0015 18.1 3.2 1 23 399 421 399 421 0.98

7 14 0.00026 0.018 14.7 0.4 1 23 440 461 440 461 0.92

8 14 3.4e-05 0.0023 17.5 0.1 1 23 466 488 466 488 0.96

9 14 3e-05 0.002 17.7 4.8 1 23 545 567 545 567 0.99

10 14 1.3e-06 8.8e-05 22.0 3.7 1 23 573 595 573 595 0.96

11 14 5.8e-05 0.0039 16.8 5.1 1 23 601 623 601 623 0.98

12 14 7e-06 0.00047 19.7 1.2 1 23 629 651 629 651 0.98

13 14 0.00015 0.01 15.5 0.1 1 23 655 677 655 677 0.98

14 14 0.00015 0.01 15.4 0.7 1 23 685 707 685 707 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.02	1.4	8.8	0.4	6	21	12	27	6	28	0.86
2	14	0.73	50	3.9	0.0	2	20	34	52	33	53	0.92
3	14	1.5	1e+02	2.9	0.2	1	12	222	233	222	242	0.88
4	14	0.0038	0.26	11.1	2.5	1	21	343	363	343	364	0.94
5	14	0.00095	0.064	13.0	2.3	3	23	370	390	369	390	0.97
6	14	2.2e-05	0.0015	18.1	3.2	1	23	399	421	399	421	0.98
7	14	0.00026	0.018	14.7	0.4	1	23	440	461	440	461	0.92
8	14	3.4e-05	0.0023	17.5	0.1	1	23	466	488	466	488	0.96
9	14	3e-05	0.002	17.7	4.8	1	23	545	567	545	567	0.99
10	14	1.3e-06	8.8e-05	22.0	3.7	1	23	573	595	573	595	0.96
11	14	5.8e-05	0.0039	16.8	5.1	1	23	601	623	601	623	0.98
12	14	7e-06	0.00047	19.7	1.2	1	23	629	651	629	651	0.98
13	14	0.00015	0.01	15.5	0.1	1	23	655	677	655	677	0.98
14	14	0.00015	0.01	15.4	0.7	1	23	685	707	685	707	0.97

Sequence Information

Coding Sequence: atGGGATCTTCACTTTTAATTTGTCCCATGTGCTGTGGGGAGACATTCAATAGTTCACAgtcattgaaatatcatttattgAGTATGACTGATAATTTGTACTGTCCTGGATGCTCACAGAGATCAGAGAGTGTTGCTGCCTTGATTCAGCATCTCGATGCATGTGGCACTGGTAATAATGTCACTTTCGAGGAAACAGtgaatgatggaaaaattggcgaGAACGAGGTGCTGATGGACACAAACGTCGAACAAATCCACGAAAGTTTCCTGGCAACAGTGAATAACGAAGGGATTATGATAGTGGGAGGGCCTAGATCCATCCAGGTAGACGACAATGgtgaaattaaaatgattcaaaaaatggaaatagaGGACGAGCCAGAGGAGTCGATTCTCCCTGACGACAACTACCAGCAATTGGATAACGTCGAGGACGACGTCTCCACGAAGCCATCGACAAAGAGAGACAGCAGTGATAATCCACCTGTGATCAGTATCCCAGAAACAGAAGACACCAATGACAACAGAATTCTTGCGATGTTCCCCGACGAGACGACTGAGTACCTGGAGAACGAGCAGAGTTTGATCGACATGAATCCAGACGATGAGACGGCAGAGCTCGAGGGTGAGGAATTAATACGCATCGATGGATCAGCTCTCTACAGCTGCAGCAGTTGTGGAATGGGTTTTAATTCGGTGTTGGAACACATAAAGCAGTACCACGACGGACAAGAGGTTGTCCTGGAGATGGCCGACGAGGGATCAGCAGCTGAGGAGGAGTTTGTCCAGCCTGAGGAGCCAGTGACCAAAGCTAAACCGAGACAGAAGATGAATACAATCAAGACTGAGGAGTGTATTGACTCCGAGGGGAGACTTTACACGAGAAAAGTCGTGCAGATTGAGCCCTTCTGGGATCGTTCCAACAAcgtcaattcaaattcaaaaacaacATCGATGCTCGAGAAATTCTTCTCGAACGCCGAACAGACCAAGAAACATGATCTACCAGTTCCCCCAAAAGACTATCGTTGCAATCAGTGCCAAGAACACTTTCCCAGACTCGTAGATTTTCGAACTCACGTCTGCATGAACGGTTCAAATCATTGCGACCACTGCGACCAGTCATTCGCAACAATTAAAGCCCTCCAAATCCATTCAAAAATCCACGAAGAGTCTGGTGACCCGAGCCACTTCATCTGCACAATATGCGGCACTAAATTCTCCTCCCACAAGAGCCTACGTCTGCACTCTCGAATGCACGCACCAGTTCGAGAAAGGCACGTGGACGCCCCCGAGGGTGACACCGACGACACATTTACCTGCGACGAgtgtggaaaatcattttccgaGTCCTACAGAAGTGCCCACATGGCACTTCACACTGGCGACTCGTACACCTGCACTATATGCAATCGAAAATTTGATTCTGCTGATTCACTGGCAATGCACGCAGCTGTTCACCCAGAGCTAGGTGGATTTCATCCGAATAGGGGAAAGGGTAGAAAGGTCTCAAGAAAGATGAAAGCACCGAGTCCTGTGGATGGTGATCTTGGAACGACTGAGGGACAGGTGGTTGATGGCAATGAGAATGATAATGATAGCAACGATAATGGAGATTTGTCGAAGCCTTATCAGTGCCAGCATTGTGGGAGAAGATTTACAAGACCTCACGAGAAGGTGAAGCACGAGAGAATTCACACCGGTGAAAAGCCACATGCCTGCGAGGTCTGTGGTAAGACCTTCAGGGTGTCATACTGCCTGACACTCCACATGAGAACACACACTGGTGTTCGTCCATATGAGTGCAAACACTGTGGAAAACGTTTCAAAGCATCATCAGTCTACAATCATCACTTGCTCACTCACGGCGATGAGAGGGCCTACAAGTGTCCATTCtgcccaaaaaaattcaaaacccGAGTTCAATTAGCTGGACACAAGAACAGTCATACCAAACCATTCAGGTGCACCGAGTGCTCCAGACCCTTCGCCTCTTTGTACGCAGCTAGGGCTCACATTGCTACACACAAGAAGgacaataatttgaaattccactgTTATATCTGCGGTGCATCCTATGGACGTGCATTTGCACTCAATGATCACATGAAGAATCATGGAACTGATGCCACTCTACCACCTGAACCTGCACGCGAGGAAATCATTAATGAGGATTTTCTACTGGAGGAGGACATCACTGAGCAGGAGCTCACCCAGGATATCACGCCTGATTTGCAACTGAGTGAAAATGGAATGATCAAGAAATTCGTGGACTCTGATTGA
Protein Sequence: MGSSLLICPMCCGETFNSSQSLKYHLLSMTDNLYCPGCSQRSESVAALIQHLDACGTGNNVTFEETVNDGKIGENEVLMDTNVEQIHESFLATVNNEGIMIVGGPRSIQVDDNGEIKMIQKMEIEDEPEESILPDDNYQQLDNVEDDVSTKPSTKRDSSDNPPVISIPETEDTNDNRILAMFPDETTEYLENEQSLIDMNPDDETAELEGEELIRIDGSALYSCSSCGMGFNSVLEHIKQYHDGQEVVLEMADEGSAAEEEFVQPEEPVTKAKPRQKMNTIKTEECIDSEGRLYTRKVVQIEPFWDRSNNVNSNSKTTSMLEKFFSNAEQTKKHDLPVPPKDYRCNQCQEHFPRLVDFRTHVCMNGSNHCDHCDQSFATIKALQIHSKIHEESGDPSHFICTICGTKFSSHKSLRLHSRMHAPVRERHVDAPEGDTDDTFTCDECGKSFSESYRSAHMALHTGDSYTCTICNRKFDSADSLAMHAAVHPELGGFHPNRGKGRKVSRKMKAPSPVDGDLGTTEGQVVDGNENDNDSNDNGDLSKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYECKHCGKRFKASSVYNHHLLTHGDERAYKCPFCPKKFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIATHKKDNNLKFHCYICGASYGRAFALNDHMKNHGTDATLPPEPAREEIINEDFLLEEDITEQELTQDITPDLQLSENGMIKKFVDSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -