Basic Information

Insect: Fopius arisanus
Gene Symbol: -
Assembly: GCA_000806365.1
Location: NW:905829-909695[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00051 0.035 13.8 2.4 1 23 337 359 337 359 0.98

2 12 0.00014 0.0092 15.6 2.0 1 23 363 385 363 385 0.99

3 12 3e-05 0.0021 17.7 3.9 1 23 390 412 390 412 0.96

4 12 3.5e-05 0.0023 17.5 2.7 1 23 452 474 452 474 0.98

5 12 0.00054 0.037 13.7 1.4 1 23 479 501 479 501 0.97

6 12 0.00044 0.03 14.0 1.7 1 23 549 571 549 571 0.98

7 12 0.0008 0.055 13.2 0.3 2 23 579 600 578 600 0.97

8 12 6.7e-07 4.6e-05 22.9 2.1 1 23 611 633 611 633 0.96

9 12 4.2e-05 0.0029 17.2 1.0 1 23 639 661 639 661 0.98

10 12 0.00011 0.0073 15.9 0.7 1 23 667 689 667 689 0.98

11 12 3.2e-06 0.00022 20.7 2.0 1 23 695 717 695 717 0.96

12 12 5.8e-05 0.0039 16.8 0.3 1 22 723 744 723 744 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00051	0.035	13.8	2.4	1	23	337	359	337	359	0.98
2	12	0.00014	0.0092	15.6	2.0	1	23	363	385	363	385	0.99
3	12	3e-05	0.0021	17.7	3.9	1	23	390	412	390	412	0.96
4	12	3.5e-05	0.0023	17.5	2.7	1	23	452	474	452	474	0.98
5	12	0.00054	0.037	13.7	1.4	1	23	479	501	479	501	0.97
6	12	0.00044	0.03	14.0	1.7	1	23	549	571	549	571	0.98
7	12	0.0008	0.055	13.2	0.3	2	23	579	600	578	600	0.97
8	12	6.7e-07	4.6e-05	22.9	2.1	1	23	611	633	611	633	0.96
9	12	4.2e-05	0.0029	17.2	1.0	1	23	639	661	639	661	0.98
10	12	0.00011	0.0073	15.9	0.7	1	23	667	689	667	689	0.98
11	12	3.2e-06	0.00022	20.7	2.0	1	23	695	717	695	717	0.96
12	12	5.8e-05	0.0039	16.8	0.3	1	22	723	744	723	744	0.96

Sequence Information

Coding Sequence: ATGGATCGTGTCTGCAGGATATGTTTGACAGAGGCAACAAATTTAACATCTATATTCTGCAGTGGGCAATTAGACGATCTTTCTGGATTGTCCCACAAAATTCAACAGTGCGGTGCAATAGAGATACACGAGAGAGATGGGTTACCCTCGTTGATCTGTGATGTATGTATTTATAAAGCAAATGTTGCTCACGAATTTCGCCAGCAGTGCCAGCACTCGGACGCCAGACTGAGACTCTATTACGACAAGCCACCACGTACTGATCCAATCGACACGAGTACCCAAACAGATTCCCACATAAGGATTCTGGTGACGAAAAAAGTCGAGAGCCCGCATCAGAATTACTTCGTCAAAGAAGAGATTCAGAGCATGGACCACGAGCTTACTAATTCGATAGACGTGTACACGCAGAATCATCAGACAGTGGTTCAGGCGAGTGCAATAGATTCtgaagataaattatttctgtgTCAAATTGGTTTTGATGGGTCTAAGGACATGGAGAAGGACACTGTGATCTTGGAGGCCCATCCGGACGAGATCCAGTGCTCGCCGCGGGGTACACAGGTGCTGCTGGAGGTGCCAAATGACGTGGAGCACCGACTTCAGGAAACAGAGCACTCGATAACCGAGATGAAGCCTAGTGAGGCAGCCCAGTACCTCAATGAGCACTTGTTGACCTCAACTGTCAGCCcagaagaggaggaggaggaaggaATTGCAGGTGACGATACACTGAATGACGACGACGACGATGACGACGAAGACGACGATATGATGGACACTGGGCACGCAGTGCCTCAGCCACAGGCTGAGTGCGAGCCCGAACCACAACAAATACGAGAGCAAGAGCTGGTTGGGGCTGAAGAAGTAATAATACCTGACGTCCTTCCCAGGAGACCCACGAGAAAGGCAAAACCAAGTGCTGGAAAGTCGTACAGCATTGACGAGCTAGACGGTGAGTTCGAGTCCATGGAGGACGACGAGCATGACTCAGAGGAGCCAAAATTCAAGTGCAAAGTCTGTCAGAAGAAGTATGCAACCCTGAAAGGGTTCAAGAATCACTCGCAGGTGCATGATAAGAAGTACAAGTGTCCGACGTGttcgaaattattttacaaactCGAGAACATGGAGAAACACAGAAAGATCCATGAGACCAAGCCCCACGCATGCCAGACGTGTCACACATCATTTGCCAAGCCTCAGAGTCTAGTTCGACACATGAAGACACACGTGGACGACTCAACGAACGACAGTACCACCACGAAAGACACGAAAGTGGAGAACTCTGAGGATGAGGACGAGCCTCAGGCAAACGAGCCGGATGAATTCGAAAATGCCCCTGGCCTCTACAAATGCGACATTTGTAATCAATTCTGCTCGTCCCTCAAGAATTTAAAACGCCACGCACTCGTTCATGGTGAGAAAAAGTACTCGTGTACTGTTTGTAAAAAGTGGTTTTTCAGGCCGGATACACTGAAAAAACACGCTGAGAAACACGGACACGGTCTTCTCgacaatttaattgacgaGAACAAATTATTCGACTCTGATGATGACTCACCCCCTCATCCGGCTCACAGTACGAGTGATAATTCAGGGAAACGTGAGGAGAGCGATGAGGATGGTGCCTCGGGTGAATACAAATGCCAGCACTGTGACAAAGTGATGGCTACGATGAAGGGCTTGAGAAGACACGTGTCGATGCACAAACCAAAAGCAGAGCCAGTGGTATGTGAGATTTGTAAAAAAGTTTGCGCCAGTCAGGCTAGACTGGCGCTACACGCAAAGACTCACAATAAACCAAAGGAGAAGGTACCGAGGGAGTATCTGTGTCATATCTGCAGCAAAGTCTACCCCAGTAATTCCTCGTTGACGTACCACATGAGGACACACACAGGGGTAAAACCCCACGTTTGCAAAATTTGCAACAGTGGATTCACAACGACAACAAGTCTGGCTAATCACATAAGAATTCATACCGGTGATAAACCATTTGTCTGTCACGTATGCAGTGCTGCTTTCGCTGTGAGCTCAGCCTTCAGGAGGCACTTGACTCGGCACACTGGAGAGGCGAATTATCTCTGCAAGACCTGTGGCAAGGCCTTCAAACGTCTCAGCACACTCAAGGAGCACACTTACACCCACTCCGGGGAGAAACCGTACGTTTGCAAAACTTGTGGAGCTGCTTACAGCCACTCTGGATCACTTTTTGCACATCAGAAACGCTGTCGAGCTCAGTATGGGGAGATGGTGACTGAGGAACATCATAATGTTGTGGCTCATCACATTCATGTTAATAATGTGCAGACAGCTGTGAGATCGCTTGCCGTTATTggacaaatattttaa
Protein Sequence: MDRVCRICLTEATNLTSIFCSGQLDDLSGLSHKIQQCGAIEIHERDGLPSLICDVCIYKANVAHEFRQQCQHSDARLRLYYDKPPRTDPIDTSTQTDSHIRILVTKKVESPHQNYFVKEEIQSMDHELTNSIDVYTQNHQTVVQASAIDSEDKLFLCQIGFDGSKDMEKDTVILEAHPDEIQCSPRGTQVLLEVPNDVEHRLQETEHSITEMKPSEAAQYLNEHLLTSTVSPEEEEEEGIAGDDTLNDDDDDDDEDDDMMDTGHAVPQPQAECEPEPQQIREQELVGAEEVIIPDVLPRRPTRKAKPSAGKSYSIDELDGEFESMEDDEHDSEEPKFKCKVCQKKYATLKGFKNHSQVHDKKYKCPTCSKLFYKLENMEKHRKIHETKPHACQTCHTSFAKPQSLVRHMKTHVDDSTNDSTTTKDTKVENSEDEDEPQANEPDEFENAPGLYKCDICNQFCSSLKNLKRHALVHGEKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLIDENKLFDSDDDSPPHPAHSTSDNSGKREESDEDGASGEYKCQHCDKVMATMKGLRRHVSMHKPKAEPVVCEICKKVCASQARLALHAKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMVTEEHHNVVAHHIHVNNVQTAVRSLAVIGQIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01273277;
90% Identity: -
80% Identity: -