Fari002853.1
Basic Information
- Insect
- Fopius arisanus
- Gene Symbol
- -
- Assembly
- GCA_000806365.1
- Location
- NW:213785-219036[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 6.3 4.2e+02 0.9 0.1 2 17 58 73 57 74 0.88 2 21 4.1 2.8e+02 1.5 6.7 2 23 198 220 198 220 0.96 3 21 0.0059 0.4 10.5 1.9 1 23 279 301 279 301 0.97 4 21 0.06 4.1 7.3 0.5 1 23 350 372 350 372 0.98 5 21 0.005 0.34 10.7 0.3 1 19 408 426 408 428 0.95 6 21 0.11 7.3 6.5 1.4 1 23 441 464 441 464 0.88 7 21 0.031 2.1 8.2 3.3 2 23 470 491 469 491 0.95 8 21 0.00095 0.065 13.0 0.1 3 23 524 544 522 544 0.97 9 21 3.2e-07 2.2e-05 23.9 0.3 2 23 590 612 589 612 0.97 10 21 3.2e-05 0.0022 17.6 0.2 1 23 618 641 618 641 0.94 11 21 0.0042 0.28 10.9 1.3 1 23 652 675 652 675 0.95 12 21 3.4e-05 0.0023 17.5 0.9 3 23 685 705 683 705 0.92 13 21 0.02 1.3 8.8 0.0 3 20 764 781 762 781 0.94 14 21 0.0004 0.027 14.1 0.0 2 23 800 821 799 821 0.97 15 21 6.9e-05 0.0047 16.5 0.6 2 23 837 858 836 858 0.96 16 21 7.2e-05 0.0049 16.5 0.3 1 23 879 902 879 902 0.91 17 21 0.044 3 7.7 0.3 2 23 964 986 963 986 0.95 18 21 3.8e-05 0.0026 17.4 0.2 2 23 1007 1029 1006 1029 0.94 19 21 0.17 11 5.9 0.5 1 23 1035 1059 1035 1059 0.95 20 21 9.3 6.3e+02 0.4 0.5 1 20 1064 1083 1064 1087 0.69 21 21 0.093 6.3 6.7 0.1 2 23 1117 1139 1117 1139 0.93
Sequence Information
- Coding Sequence
- ATGGACGAAGTAGTTGAGCTGGAGACGCTGGACAATGTGTGCCGTTTGTGTCTATCAAAGGACGAGCCCAAGTCACCGATATTCGGCGTCCAAGAGGCAGTACCACTCGCTGAGAAGATCCAAAACTGTCTCAGCATCGAGGTGCTTCATGATGACAATTTCACCAAACTTATCTGTGGTAACTGCGTCAAGAGTGTTAATCAGTGGTACAGCTACAGGGATAGCTGTCTCAGGTCTCAGGAGAAGCTGCAGAGATGGCTAGAGAAGCGTGGAGATGTGTTTCTCTTTCCTCAGATAACTCACATAAAATCGGAGCCAATGGATCCAGAGGACATGCCGCCCCCAGAGGATGTGATCGATCCCATGGAGAATATGGAAGACATCCCAGAGGTCCCTTCCCGCCCTCGCTCCAAACGTCGCAGATCTTCAAGTAACTCCTCagAAGGAGAATCGGGTACAGAGCTACTGCTGAATCCGATGGCAGCAGCAGCAAAAGATCTGCTGGATCCCTCGGAGTACCGTTCAACCCaccgtaaaaaattaaaaagaggCCCCCACACCCACTTCCGCGGTGTAAAAGTATTCAAACGCAAATGCCCCCACTGCATGATTCACTTGCACTCAAAATCGTCGTACAAGAGTCACATGGAGCGTTACCATAGCGcgggaaaatcgcgaaacggtccGTCATATCGTGCCCCATCAACGGACAAATCTGAATCAATTGACGAGGACATAGAGATGGTAGAGGACGTGGAGGACGAGCTCCTGTCGATGGAGAAAAATGCCCCCTTGACTCAAGTCCAAGAAAACATAATAAGTCAGTTAAAAACATTCTCATGCTACTCGTGTCAACAAGTGTTTAGCGATCGTCGTAGCACTCTCAATCACATACGCCAGCATATGCCGGATTTACGCCCTTACACGTGCATTGCATGCCTCACAGAATTTCCCGATCGTTCGATATACAAACTCCATTGTGGTGCGTCATTCGATTGCGCTATGAAAATTGCCCTTGTGGTACCAAAACACGGCACGGAGAAGTATTTCACTTGCAACATGTGCCTTAGGCCGATGCCAAATCGAAAAGAACTGCTCAGTCACTTGTCAAAACACTCGGACAAGCATTACGAGCCCCTCACAACATCCGCTTCCTTGAAGTCCCCGAAAACTAAAGCAGCGCCACCTGGACCATACCGTCACGGCGATCCAGCGCACAATCACACGTGCGACTACTGCGGTATGATTTATCGATATAAACCCAATATGCTGAAGCACGAGGACTTGTGCAAACGTCTCCCTCCGGACGAGAGAACGTCGTATCGTTGCGCTCACTGTGGCATGACGTTCCTCgtcttcaagaaatttcaatctcaCATTGCACTCGAGCACAACAAGAAAGATCTCGTCTGCTACGAGTGCAATGCCAAATTTAAGCACTCGAATGAGTACCTGGTGCATCATCAGCAGCACCGCACCGCCACCAGAGCTGATGAGGCTAGAGATGATGATGCTAAAGGTGTTTGGAAGAATTACAACTCGAGTATGAAAGTTACGATGAAATTTGGTTGCGCTGTTTGTCCGCAAGAGTTCGGGACTAAGGAAGAGCTTGCACAGCACAGGATGACGCATTCCAAGGGTCATATGAAGGGTCAGAATCACGTGGAGATTGTTGATCCAGATATGGATGATGGATTGGATCAGTCGGACTCGGACATCAATGCACCGGATTACGTGCCTATGGAGAATTCCCATGGTCGTAGCACCGAGTGCACCACATGCGGCAAGATATTCGCCAACTATCCGAATCTCAGGAGGCACATCAGGACGGTTCACATTGTTGCTGGTCGGTTCAGCTGTCCGAAGTGCCCCAAAACATTTACGAGTGAGGATCTGTGGAATCAGCATGCAGAGAGGGCACATCCCAAGGAACTGCCTCCAGACGTGGTGATGCACAAGTGTCAACAGTGCAAGAACATGTTTGAAACTCAGGAGATGCTGACCGGTCATCTTCAGGAGGCGCATGGAATGGCGGAGGATGATCATCTGGCTTGCGACATCTGTGGCAAACGTTTCAGTAATGAGACATCATTGAAGATTCACAGAGGTCACCACTTTAGGCGGGACTCGAGGTTGTCCATCAGATCGGTGCCACATCCCCTGGATCAGGTGCAGGTGGAGATGACGGAGGAGCCGATAGAGATAACCATGACACCACGTCCGGCTAAAGCCAAGAAGTCCTTCCCAACGCCGAGCTTCAAGCAGTCAATGTCACCGACTACTTTGGCCTGCGCTGTCTGCGATGATTCGTTCACGGACGTTTCGGAATTGAGGAAGCACCTGTGGGAAGTTCACTGCCAAAAGCACAAGTCAGAGAAGTCATTTGTTGGTGATCTGCAGTGTGAGCTCTGTACTAATGTCTTTCCGGATGAGAAGGCACTCGAGGAGCACATGAGGTGGCACAAGGAGAATCCTATCCTGGCGGAGGTCACCAGGCCTGTTGACATATCCTGCGACATATGCGGCAAATTCTACAGCTCGACGAAGGCCCTCTGGAAGCACAAGAAGTTGCACAAGACAACTCCTGTAACCGGAATGAAGCTACAGTCTCTCAAGAAGACAACACCCACTTCTTTCCCCTGTCCAGTCTGCAAGAAGGTATTCAACAACGAGACATCCATGAAAAAGCACAAAGCAGCTGCTCACTACGTCAGAAAGTCACTCAACTCGTTACCCAGGAAGTCAACGACTCCGTCACCGTCGAAGGTCGATGAAGATGGCAAGCCCAAACGACCGAAACTTGACTTTGACATTATCAGAAAGGCTTATCACCTGGGTGAGCCATCGGGAAGCAGCTTTGGAACACCTAATCCACCGAAGAAGCCCGTCACCTGTGGAATATGCAAAAAACTACTGCCAAGCATGAGCTCTCTCTACAAGCATCGTCAGAACGTCCACAAGAGCAGCATTGGGAAGCCCCTGGAGGTGGACGAGGGCGAGGTCGAGGGTGAGGGTGTACCCTGCACCGAGTGCTACAAGGTCTTCTCTAATCCTGCCAACATGAAACAGCATTACACCAAAGTCCATGGAAATGGTGACAAACACTACTGCACCATGGACGACTGCGAAGAAGTCTTTGATACGTCACTAGCCAAACAGGCACATGAGAAGAGTCACATGAACATTCTATACAGCTGCAACCTGTGCTCCAGGCACATGTTCAATCGCTCTGCCATCGATGGTCATCTTCTCAATGAGCACAACGGCGAGGTGGAGGGCAAGAAGACTCAGCTCTTCTACAGAAAAACTGATCTGGGGAGTTATGAGGTTAAGGGGGCCGATGGCAGGGTATGTCCCATTTGCAAAATCAAGTATCCCAATATTAAGGCTATGAAGATCCATTATGTCAAGATTCATGAGGGCGTCAGTTAG
- Protein Sequence
- MDEVVELETLDNVCRLCLSKDEPKSPIFGVQEAVPLAEKIQNCLSIEVLHDDNFTKLICGNCVKSVNQWYSYRDSCLRSQEKLQRWLEKRGDVFLFPQITHIKSEPMDPEDMPPPEDVIDPMENMEDIPEVPSRPRSKRRRSSSNSSEGESGTELLLNPMAAAAKDLLDPSEYRSTHRKKLKRGPHTHFRGVKVFKRKCPHCMIHLHSKSSYKSHMERYHSAGKSRNGPSYRAPSTDKSESIDEDIEMVEDVEDELLSMEKNAPLTQVQENIISQLKTFSCYSCQQVFSDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFDCAMKIALVVPKHGTEKYFTCNMCLRPMPNRKELLSHLSKHSDKHYEPLTTSASLKSPKTKAAPPGPYRHGDPAHNHTCDYCGMIYRYKPNMLKHEDLCKRLPPDERTSYRCAHCGMTFLVFKKFQSHIALEHNKKDLVCYECNAKFKHSNEYLVHHQQHRTATRADEARDDDAKGVWKNYNSSMKVTMKFGCAVCPQEFGTKEELAQHRMTHSKGHMKGQNHVEIVDPDMDDGLDQSDSDINAPDYVPMENSHGRSTECTTCGKIFANYPNLRRHIRTVHIVAGRFSCPKCPKTFTSEDLWNQHAERAHPKELPPDVVMHKCQQCKNMFETQEMLTGHLQEAHGMAEDDHLACDICGKRFSNETSLKIHRGHHFRRDSRLSIRSVPHPLDQVQVEMTEEPIEITMTPRPAKAKKSFPTPSFKQSMSPTTLACAVCDDSFTDVSELRKHLWEVHCQKHKSEKSFVGDLQCELCTNVFPDEKALEEHMRWHKENPILAEVTRPVDISCDICGKFYSSTKALWKHKKLHKTTPVTGMKLQSLKKTTPTSFPCPVCKKVFNNETSMKKHKAAAHYVRKSLNSLPRKSTTPSPSKVDEDGKPKRPKLDFDIIRKAYHLGEPSGSSFGTPNPPKKPVTCGICKKLLPSMSSLYKHRQNVHKSSIGKPLEVDEGEVEGEGVPCTECYKVFSNPANMKQHYTKVHGNGDKHYCTMDDCEEVFDTSLAKQAHEKSHMNILYSCNLCSRHMFNRSAIDGHLLNEHNGEVEGKKTQLFYRKTDLGSYEVKGADGRVCPICKIKYPNIKAMKIHYVKIHEGVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00351346;
- 90% Identity
- -
- 80% Identity
- -