Fari003109.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Fopius arisanus
Gene Symbol
-
Assembly
GCA_000806365.1
Location
NW:848109-855715[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.0017 0.11 12.2 0.5 2 23 369 391 369 391 0.93
2 14 3.6e-05 0.0025 17.4 0.3 1 23 398 420 398 420 0.98
3 14 2.8e-06 0.00019 20.9 2.6 1 23 426 448 426 448 0.96
4 14 0.00012 0.0084 15.7 3.5 1 23 457 479 457 479 0.96
5 14 1.3e-06 8.7e-05 22.0 0.8 1 23 485 507 485 507 0.98
6 14 3.9e-06 0.00027 20.5 0.5 1 23 512 534 512 534 0.97
7 14 0.0082 0.56 10.0 9.2 1 23 541 563 541 563 0.99
8 14 6.6e-05 0.0045 16.6 3.5 2 23 583 604 582 604 0.97
9 14 1.4e-05 0.00093 18.8 0.5 2 23 612 634 611 634 0.96
10 14 0.56 38 4.2 0.3 3 23 642 662 640 662 0.94
11 14 0.0055 0.37 10.6 4.0 1 23 668 690 668 690 0.98
12 14 2.5e-07 1.7e-05 24.2 0.7 1 23 696 718 696 718 0.98
13 14 1.9e-05 0.0013 18.3 3.8 1 23 724 746 724 746 0.98
14 14 0.0011 0.078 12.7 1.0 2 23 752 773 751 774 0.94

Sequence Information

Coding Sequence
atgaaagtcgTGTGTGCTGCACCAACCTGCAAATACTCCTCTGACCATGAAGACTCgagtaatattatttttgtcagCTTTCCAAATGATGATACTGCCACTGTATGGGCCCACAACTGTGGCAGATCAGACCTGATTATTAAATCAAATGAAGAATTGCATCTGAATTACTATATTTGCTCAAACCATATTGaagatcaatattttttgagtaaaAGCAATCAAATAATCATCACTCAAGGGGCAATACCAACACTTTTTGGGCTTCAAATGCAATCAGTGGAATCCACTGATGTTATAAATTCGATAGAATTGAGCGAACAAAATTTTGTGGATGCAGCATCAGAATATGAACATACAATCTACAATGGTAATATTACTAATGATAACAACGAATcagatgaaattaatgaaaacgaGGAAATCCGGAgaattgagaatattaatGTTAATATGGAGGAGTTCGAAGAGATGGCGAGATTCTTAAATCTCTGTAGAATATGTGGAAAAAATCCACCAGAATGTGTCAACATATTTAATGAGAGAGAAGGTGCACTCACCATCCAGCAAAAAATTCACCTTCATTTACCGATAATTATCGAAAGTGGAGATGGATTGCCACAGAAAATATGCTTAGAGTGCCATGAAAAGGTGGAAAGCTCCCATACTCTTGTGATAACTAGTTTATTGAATGATATAAGATTGAggaaatttctaaatttacCAAATAAGtataattatgaagaaaaataccgTGACTTCATACCAAACGAGGAATTGGTAATAACAAACGAGGTACCATTCTTTGGTGGTATCCCGTCTGAAAAGTCACGTTCTCAAGAGTCtgaaaaagagaaacaattaaaatacgTTGTACATTctgatttaaataatttaattcttcaacCTCTGCCACTCCAAAATGATGAGAGATCAAAGACTGATTTACAGAGTGAGCCCGTGGTGTCAAGAGCCGATCAATTCCACAGTCAGGATAATAATGAGCCGGTGTTGATAGAAAAGTCAAATTGCCAAGTTGAAGATGTGTTGAATAATaagaatgaaatattgatggcTGAACAGACATTAGTCAGATCAAGTCGTCGATGTGGTTACTGCTCTCAATCCTTCTCCAATCGTAAAGAAATTCAGGGACATATGACGGAGGCCCACAATGGCCAGGGCTCACTCTTCAAATGCGGGACTTGTGATAAATCATATGAGAAGTGGTCCAGCCTGGATGTTCATGAGGCCACTCATCGACAAGACAAGCCCTATCTCTGCGATCTGTGCGGGAAGAGCTTCAAACACTCAAATAATCTCAGAGGGCATAAACGCGTGCATCTCGATGCTGCTAGGAAAAAACGACACATTTGTGAGACCTGTGGAAGTGCTTTCCGATCCagATTCCACCTGCAAGAACACATGAACCAACATAATGGTAAGAAGCCCTACGTCTGTGAACAGTGTGGAAAGGCATTTTCCAAGAGAATACAATTACGACAGCATAGATTGTCTCacggaattaataaatacgCCTGTCCAATCTGCGGTGCGACTTTCAATCGAAGGGGTAATATGAATACGCATTTCAAGAGACACAGCAACAGTGATGGAACGTACAAGTGCAGTGTGTGTGATTGCAAGTGCAATTCGATGAGCGATTTGAAGCACCACCGCAAGAGTCACAGCTTGAACGATATAATCGAGAGTATAAAACGCCGATCCATTGACAAAACCATCTGGCAATGTGCAACGTGTAGACGTGTATTTTCGAAACGTACACATCTGACTAATCACGAGCGAACCCACGAAGTTGATCAGCCGAAAGTCGAGTGTGAGaagtgtggaaaaaaattggcgagCAAGAGCTCCTTGAGGTATCACATCAAGTCAATGCACACGTGCGAGAGAAGCCACCTGTGTCAATTCTGTGGTGATGCATTTATCTCGAGAGAAGCCAGACTCATTCACGAGAGAATCCACACTGGAGAGCGACCCTATTCCTGCAAATTGTGTAATATGCAATACAGATGCTCAAGTAATCTGAGTCAACATATGAAAGCTCATGCCGATGTTCGACCTTTTGTTTGTCAGTACTGCTCCAAGTCTTTTACACGGAGATCAGCTCTCATAATTCATGAGAGAGTTCACACTGGGGAGAAGCCATTCGTCTGTTCAGTGTGCAATCGAAGATTCTCTCAAAAACATGACATGAAGAAACACGAAAAAATCCATCAGTCCAAAATATTGAGTTGCGAAAAATGTCAGGAGACTTTTGCCAACAAGATGGAAATTGTTAAGCACCTGGAGTCTCACCACAAACCAGATACCCAGGATACTGCACCTGTTGAGGAGTATGTTGAGttgtcagaaaattttgaCAACTACTCGTTAAATATCAGTGATATTCAATATTCGTGA
Protein Sequence
MKVVCAAPTCKYSSDHEDSSNIIFVSFPNDDTATVWAHNCGRSDLIIKSNEELHLNYYICSNHIEDQYFLSKSNQIIITQGAIPTLFGLQMQSVESTDVINSIELSEQNFVDAASEYEHTIYNGNITNDNNESDEINENEEIRRIENINVNMEEFEEMARFLNLCRICGKNPPECVNIFNEREGALTIQQKIHLHLPIIIESGDGLPQKICLECHEKVESSHTLVITSLLNDIRLRKFLNLPNKYNYEEKYRDFIPNEELVITNEVPFFGGIPSEKSRSQESEKEKQLKYVVHSDLNNLILQPLPLQNDERSKTDLQSEPVVSRADQFHSQDNNEPVLIEKSNCQVEDVLNNKNEILMAEQTLVRSSRRCGYCSQSFSNRKEIQGHMTEAHNGQGSLFKCGTCDKSYEKWSSLDVHEATHRQDKPYLCDLCGKSFKHSNNLRGHKRVHLDAARKKRHICETCGSAFRSRFHLQEHMNQHNGKKPYVCEQCGKAFSKRIQLRQHRLSHGINKYACPICGATFNRRGNMNTHFKRHSNSDGTYKCSVCDCKCNSMSDLKHHRKSHSLNDIIESIKRRSIDKTIWQCATCRRVFSKRTHLTNHERTHEVDQPKVECEKCGKKLASKSSLRYHIKSMHTCERSHLCQFCGDAFISREARLIHERIHTGERPYSCKLCNMQYRCSSNLSQHMKAHADVRPFVCQYCSKSFTRRSALIIHERVHTGEKPFVCSVCNRRFSQKHDMKKHEKIHQSKILSCEKCQETFANKMEIVKHLESHHKPDTQDTAPVEEYVELSENFDNYSLNISDIQYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-