Fari009641.1
Basic Information
- Insect
- Fopius arisanus
- Gene Symbol
- -
- Assembly
- GCA_000806365.1
- Location
- NW:441403-465653[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.42 29 4.6 1.8 2 23 321 343 320 343 0.91 2 17 0.0013 0.089 12.5 1.3 1 23 363 386 363 386 0.96 3 17 0.0018 0.12 12.1 1.8 1 23 392 415 392 415 0.97 4 17 0.00016 0.011 15.4 3.3 2 23 421 443 420 443 0.95 5 17 3.3e-05 0.0023 17.5 4.0 1 23 448 471 448 471 0.97 6 17 4.3e-07 2.9e-05 23.5 0.5 2 23 478 499 477 499 0.97 7 17 2.1e-05 0.0014 18.2 3.0 1 23 505 527 505 527 0.98 8 17 2.2e-06 0.00015 21.2 0.2 1 23 533 555 533 555 0.98 9 17 0.00069 0.047 13.4 0.1 2 23 822 844 821 844 0.91 10 17 1.3 91 3.1 0.3 1 23 856 879 856 879 0.93 11 17 0.0039 0.26 11.0 3.7 1 23 892 915 892 915 0.94 12 17 0.00014 0.0095 15.6 5.8 1 23 921 943 921 944 0.95 13 17 0.01 0.69 9.7 0.6 2 23 950 972 949 972 0.95 14 17 0.00024 0.016 14.8 0.2 1 23 977 1000 977 1000 0.97 15 17 3.1e-07 2.1e-05 23.9 0.4 2 23 1007 1028 1006 1028 0.96 16 17 1e-06 6.8e-05 22.3 0.3 1 23 1034 1056 1034 1056 0.96 17 17 3.4e-05 0.0023 17.5 1.0 1 23 1062 1084 1062 1084 0.98
Sequence Information
- Coding Sequence
- atgtcgtCCTACGATTGCATGGACTTGTGCCGTTTGTGTCTCGTTAAGGATCGTGTATCCGTGCCAATATTCGAGGGTGAGGGTGATGTGCGAcagatatttctcaaaattgcTGCGTGCCTGCCGGTCAAGGTAGGAAGAGAAGACAAACTCCCCAAGAAAATCTGTGACGATTGTGTGTACAAAGTAGAATTGCTCTACGAATTTTGGAATACAACAGCAAATGCTGAGAAGCAGTTGCTGCAATGGCTTGGAGAGGATGGAGAGGACAAACAGGGTTACGTATCGAATGTCATGGAATCaGAACTGATGAAGCAAGAGACTGTAGAAAACAGACTGGAGAGCTCAGTGATGCAATCAGAAGATCACCAAAACAGCATGAACATGAACATGATGGACCAAATGGGACTGACAATGCCAATAATAATGACCACAGATCAGCAACAAATCACCTCAGTACCAATGTCATCAAGTGGGAATAACATTCAAGCTGTCCCAGGTACAAGTGCACAGTCTCCCAGAGggagaaaaagtggaaataacGAGGAGGACGAGGAAGAGAGTGAAGATGAAGATAATTCTGATGACGATTGTGATAATGATggaggaattaatgTGAAAGAAGAGACCCCAGAGACTGGTAGAAACGTAGAGCCTTCATTTGTTAATGTAACGATTCCCTGCGACGAGGCAGGACCATCGGGTCTACAACAGCAGAAGCTCTCAGAAATACCAGAGATGGTGATGGGGCCATCATCAGAGGGCGATCCCAAGTCTGGGAGACGAAGAGATATAAATCGGTCTAAAGATAAACCGCTGAAGAAGAGAAAGTCGTCAGTGAAGACTCCCCGGAtcatattaaaattgaaaaacggaGGAAGACCGAGGATTCCgataaattcactgaattctcaattaaaaagaTCGCCGCAGGCTGTTCGGGACTTCCTGGACTTGATTTCCTGTGAATTCTGTGGATTCAAGTGCAATGACAAGCCGACGATGTCAACGCACCTCTCGGATAATCACACAGACGATGATTTCTTGATGAAGAGCCCAGGAACGCGTATAGAGGGTACCAAAAAATTCAGCTGCAACATGTGTGGCATGATATGCGCCAAGAGGGAGACCCTGAATGCCCACTACATCCGAAGACACACGGAAAAGTACGAGTACAGTTGTGACAagtgtattaaaaaattcaagatcaaGGGTGACCTGACGACACACCTGAAGAGAAGCCACAGCGATGATCCGGTGGTGTGTGACGTATGTGGTAAATCCTGCCGAGACAAACACTCCCTTTACCTCCACCAGAAATACTCCCACTACAAGGGAAAATACACGTGTGAAAAATGCGGCAAGTGCTTGACAACTGAGGAAAATCTTGCTCATCATCTCAAGTATCAGCACGAGAAGAAGGAGCGAAAGATGTGCGAGGAGTGTGGAAAAACATTTGCATCGGTCTTTGATCTGAGAAAACATATGAGAATTCACACTGGTGAGAGGCCCTACAGATGCAGCATCTGCAGCAGAACCTTCAGCAGACAGTGCGGTCTCAATCAACACCTTCTCCTGCACACTGGTGAAAAGCTCTACATCTGCGACGTGTGTGGACGATCATTTGCCCAAAAATCAGGACTCATTGGCCACAGGAAAAAGCACAAAGGAGACCTACCACCCCTACCCCACGTTCAAATCGATCACATCGTCAAGTCATTGAAGAAGAACTATTTCCTGTTTTGCAGATCAACACAGAAATTACGAGATGATGAGGATCACGGTCTCTTCATCTTCGATCGAGCCTCAGTTGTGATGAGAAAGTGGCAGATTCTGGAGTTCGATGGAAAGCCTTATTACGCATTTGTCCCTGAGAATGAGGAGCCACTGGACCCAGAGGAGATCAGAAATCTCGAGGATCCTGAGGAGTCCCACAACGAGTCAAAACCAAAGTTAGAAGTTATTGAATCAGAAGGAGAAACTCTGCAGAACGACGAGAGTTTCTACGACTACCAATTGTCATCGCCAGAGGGTGAAGAGCCTGAGGAACTCACCGACGACGTGAAACCCATTCTTCTAAACGGAATAACAGACTCAGAGAAAGCAGAGAAAGGGGATTTGTATCAAGTGAAGATCGAGGGGAGTGTGATAACCCTGGAGAAACTGGCAGAGAACGTAGAGGAATTAAAAACATCAGAATCCATTCTCCCCGAGATCGAGGGCAATCAGACAGCTGACGAGGACACCGAGAAGCTCGAGGACGACGAGGAACAGCCCCAGGAGGTACCAAATTACGCAAAACAAGAACTGGAGGCAATTGAATTCGTGGGAGTTGACGCTgaggacgaggacgaggaGCAAGTGGACGACGTGGAGCCCGTGACCAAAGAAACATCTCCCACTATCGAgagcaaaagaaaaacaaaatacagCCCAGTTATACCCACGACAACAGCAACTCTAAAGTGCAAAGTATGTGGTGAAACATTTGGATCAGCAATAGCCTTTCGAAAGCACGTAGCATGGACCCACAAGAAAAAAGTGTGCATCCAAGAGGATGGTGCCTACATCTGTGCAGTATGTGATTACAGAACCCTGAAGAAGACCCTTTTCGCAGCCCATCTCGAGAGAAAACACGAGACTTGGCCGAGAAAGGGACAGGGTAGTCTTGTATTTCCATGCGCTGTCTGTGGTTTTGTATGCAGATCAAAGCACTCACTCCAGTCTCATTTCATAAGAAAACACACCGACAAATACGAGCACCAGTGCAAGTTTTGCCCCAAAAAATTTAAGGTCAAGGGTGATCTGACGAATCACGTGAGATTTCATCACAAGGAGAGCCCCATAAAGTGCGATGTGTGTGGCAAATTGTGTCAAAACACTGGATCACTGTACGTACACCAGAAATGGGCGCATTACAAGCCAAAGTACGAATGTCCAATCTGCAAGAGGAGAATGGTAACTCAGGAGAATTTGGATCAGCACATGGTGACACAGCacgagaagagagagaaaatagtTTGCGCTGAGTGTGGTAAGACATTCACGAAGAAGGATTCATTTAAAAGGCACATGGCAGTTCACACTGGGAGTAAACCACACGCCTGTCCAATTTGTTCTAAACCATTTGCCAGACAGTCACAGCTGAGACAGCACGTGCTAATTCACACGGGTAAAAGGCCTTTCGTCTGTGACATATGTGGAAAAGCATTCACCCAAAAGCCTGGCCTCATTTGCCACAGAAAAACACATCCTGGGCCGCATCCACCACTTCCTGTTATGCCTATTGCCGATTTGGTCAATGAATTCACTGCTGGGTACCTCCAAGAGACTGTGAATATCGGTAACGACGAGGATGAAGGGGAGTTCGAGAGCGAGGAGTCTGACGAGGAGGTCGACCAAATCGAGGAGATCAGCGAGTAA
- Protein Sequence
- MSSYDCMDLCRLCLVKDRVSVPIFEGEGDVRQIFLKIAACLPVKVGREDKLPKKICDDCVYKVELLYEFWNTTANAEKQLLQWLGEDGEDKQGYVSNVMESELMKQETVENRLESSVMQSEDHQNSMNMNMMDQMGLTMPIIMTTDQQQITSVPMSSSGNNIQAVPGTSAQSPRGRKSGNNEEDEEESEDEDNSDDDCDNDGGINVKEETPETGRNVEPSFVNVTIPCDEAGPSGLQQQKLSEIPEMVMGPSSEGDPKSGRRRDINRSKDKPLKKRKSSVKTPRIILKLKNGGRPRIPINSLNSQLKRSPQAVRDFLDLISCEFCGFKCNDKPTMSTHLSDNHTDDDFLMKSPGTRIEGTKKFSCNMCGMICAKRETLNAHYIRRHTEKYEYSCDKCIKKFKIKGDLTTHLKRSHSDDPVVCDVCGKSCRDKHSLYLHQKYSHYKGKYTCEKCGKCLTTEENLAHHLKYQHEKKERKMCEECGKTFASVFDLRKHMRIHTGERPYRCSICSRTFSRQCGLNQHLLLHTGEKLYICDVCGRSFAQKSGLIGHRKKHKGDLPPLPHVQIDHIVKSLKKNYFLFCRSTQKLRDDEDHGLFIFDRASVVMRKWQILEFDGKPYYAFVPENEEPLDPEEIRNLEDPEESHNESKPKLEVIESEGETLQNDESFYDYQLSSPEGEEPEELTDDVKPILLNGITDSEKAEKGDLYQVKIEGSVITLEKLAENVEELKTSESILPEIEGNQTADEDTEKLEDDEEQPQEVPNYAKQELEAIEFVGVDAEDEDEEQVDDVEPVTKETSPTIESKRKTKYSPVIPTTTATLKCKVCGETFGSAIAFRKHVAWTHKKKVCIQEDGAYICAVCDYRTLKKTLFAAHLERKHETWPRKGQGSLVFPCAVCGFVCRSKHSLQSHFIRKHTDKYEHQCKFCPKKFKVKGDLTNHVRFHHKESPIKCDVCGKLCQNTGSLYVHQKWAHYKPKYECPICKRRMVTQENLDQHMVTQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGSKPHACPICSKPFARQSQLRQHVLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADLVNEFTAGYLQETVNIGNDEDEGEFESEESDEEVDQIEEISE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -