Fari008343.1
Basic Information
- Insect
- Fopius arisanus
- Gene Symbol
- bab2
- Assembly
- GCA_000806365.1
- Location
- NW:997350-1005959[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-07 0.00015 20.7 0.1 2 39 303 340 302 346 0.89 2 2 0.7 8.9e+02 -1.1 0.0 33 42 343 352 340 354 0.85
Sequence Information
- Coding Sequence
- atggATTACCTTGAGGATCCTGACTCGGCTGAAAGTACCATGGAGACAGGTAGCAATTTGCCAGCACCGGGCAATTACCCGGGTGGCAATCGTCAGCAATTCTGCGTATCCTGGAATTCTCACCAGTCGAATATGCACAGTGCATTTCCAAAGTTACTCAGTTCAGAGCAATTCGTCGATGTGACACTTGCCTGCGATGGTGGCTCGATAAAGTGCCACAAGGTCGTACTCTCGGCCTGCAGTGATTACCTGGAGAGACTTCTCCTGGAAATACCCTGCACCCATCCAATTATATTCCTCAGGGATATGCGTATGTGGGAATTGCAGGCTCTCGTCGAATTCATGTACCGGGGTGAGGTCTACGTTGAGGAGCAGCAGCTCACTAGGCTCATGCAAGCTGCTGAAGCCCTTCAgGTTCGTGGCTTGTCATCACAAGGACGAGAGGCTGCCCAAGGAGAGAGTCCAACAGCCCAGAGCTCCTCCAGCACCCCATCAACCCCATCATCCCCCTCAAAGCAGACTCAGCCAAACTACAACAAAAATGACGATAACCCGGCCATAAACTCCACCGATTCCTTCCTCGACACTCCCGCCACTGTAACACCAGCCACGATAAACAACGCATCAGCAACAGGCAATCAGAACAACTCGTCAACCCCAAACAGCTCGACATTCATGAATATTGAGCACACCGAGGCACTACAGCACCTCGAAAAGGCGTTGAGCTCATGCGAGGCAACACTCACGGAAACACCTGGAATGGTCAAGATGGAACCCGATGAACAATTCACGCAGCAGGACAAGCCTTATTCGATTAGTATGGTACCAACGAGCAATTCGAATTGCAGCACTCCGAGCAGCCCCTTTCCAGCTATCGAAGGATATCAAAGACGACAGCGTCGCTCGGAGGCCGAACTAAAGCAGGCATCTGATATGGTGGCTCGTGGAATGACGTTTCAAGTTGCTTCCGAAAAATACAACATTCCGATCAGTACCATACGCTTCTACATGGTCAGAAAGGGTATCTTACAGAGGCGAAAACGTGGTCGTGGCTCGAGTAACGTAGGTGCGTCCAACAGTCAGCCGGGTAGTCCAGCGAGTCCACCGTTTCACATGATGAATTATCGTTTGCCAGAGAGCCTGAACTCGAGTCTACAGTAG
- Protein Sequence
- MDYLEDPDSAESTMETGSNLPAPGNYPGGNRQQFCVSWNSHQSNMHSAFPKLLSSEQFVDVTLACDGGSIKCHKVVLSACSDYLERLLLEIPCTHPIIFLRDMRMWELQALVEFMYRGEVYVEEQQLTRLMQAAEALQVRGLSSQGREAAQGESPTAQSSSSTPSTPSSPSKQTQPNYNKNDDNPAINSTDSFLDTPATVTPATINNASATGNQNNSSTPNSSTFMNIEHTEALQHLEKALSSCEATLTETPGMVKMEPDEQFTQQDKPYSISMVPTSNSNCSTPSSPFPAIEGYQRRQRRSEAELKQASDMVARGMTFQVASEKYNIPISTIRFYMVRKGILQRRKRGRGSSNVGASNSQPGSPASPPFHMMNYRLPESLNSSLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01001518;
- 90% Identity
- iTF_01273215;
- 80% Identity
- iTF_00728767;