Fatl068385.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- -
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000018.1:8691017-8694194[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.024 3.1 10.7 0.1 2 22 56 76 55 79 0.88 2 13 3.8 4.8e+02 3.8 1.0 5 23 84 103 82 103 0.90 3 13 0.2 26 7.8 1.9 2 23 109 130 108 130 0.95 4 13 0.0017 0.22 14.3 2.3 1 23 135 157 135 157 0.97 5 13 0.00023 0.03 17.1 1.1 3 23 165 186 163 186 0.95 6 13 0.0018 0.24 14.2 3.3 2 23 188 209 187 209 0.96 7 13 0.0025 0.32 13.8 4.1 2 23 213 235 212 235 0.96 8 13 0.0034 0.44 13.4 2.2 1 23 241 264 241 264 0.97 9 13 0.6 77 6.3 0.3 2 23 271 293 270 293 0.93 10 13 0.18 23 8.0 1.7 1 20 300 319 300 321 0.92 11 13 9.3e-05 0.012 18.3 1.2 1 23 355 378 355 378 0.97 12 13 0.00042 0.054 16.2 1.5 2 23 391 415 390 415 0.91 13 13 1.8 2.3e+02 4.8 0.0 2 23 538 560 537 560 0.88
Sequence Information
- Coding Sequence
- ATGATCCGGAGTGTCAATTTCCTTGCTAGCGAAATTTATGTTCAACATTTGTTTCGGCAGAACAGGAAGTTTCCAAAAATCTTGGTGGGATCGCAGAAACTCAGGGAAAGAATAAAAGCGAAATCGAAGGAAAAGAGAAAGAAGCAGCTGCTGAAAAACAGACTAGTTTGTGAAAAATGTCATGAAAAGTTTCCAACATGGTGGGAGATTCGGGAGCATTGGATATCGACAGGCCACAAGGAACCGGAAGAATGCCGATGGTGCAGGAAGAAGACGTACGCGCTGCAGAGCCACTTGTGCAAGGAACACTGGGACTTGGCGTGCATGTGTGCGTTCTGCGGCCAGCTGTTCATGTTCCGGGAGGGGTTGGAGCAGCATCGGCAGCGTCACGACGGCAAGCAGTACCGCTGCTTCTTATGTGGCAAACGCCGGAAATCCGAAGACCTGTTGCGGCGTCATGTGTTCAAACACTACGTATACGAGCGGTACGGCTGCAACGTCTGTGAGAAAAGGTTCAAGAAGAAGAAAAACGTCGAGAAACATCTGAAATGGGTTCATTGTGTCTGTCAGTACTGCGGTAATACTTGTGAGAGTAAAGATGCTCTGCGAGAGCATTGGAAAACTCATGACGATTTGAAGTGTGTCTTGTGCCATAAGGTTTTCTCGCAGAAGAATCGTCTCAAGTACCACTACCAAATGCGACACGGCCACCAGGACTTTTACAAGTGTACTTTGTGTTTTCAGCGGTTTGCGATGAAGTCGAAATTGCTCGAACACTTAAAACTGAAACACAAAGGGTACGCTAAAATATCTTGTGAAACTTGCGAGATGCCGTTCCTCTACTGGTCACAGTACCTGCGACACTTTGAAAAAAACCATGCCGGGCCTCAAGAGAAGTTTTTCTGCTCGTTCTGCGATTACAGTACGGACCACAGAAGCAAAATGCAATGGCACGTGGAGAAAACGTCAGGGGAGGGATTCTTCTGTAAAGTCTGTCAGATACGGTCACAGTGCAAAACTAAATTTGATGAACACATGAAGATCCATGAAGGGAAGAGGGCTTACAGTTGTGATTATTGCGAAAAAAGCTTCGCGACCGCTGATATTCTGAAGCACCACATGAGCGTGAAACACCAAGAGGTGATCATAAGGAGCCACGCTCGGGGGCACCCTTGCTTCGTCCCCGGGTGCGACCGGTATTACATGAGCAGAAGCAGCTTAACACGCCACATGAGGAGGAGCCACATCGAAGCAGGCGTGTCCGGCTCGTCCGGGCAGTATTGCGCCGACAGCACCGTCGAGTGTCGGTTTCCCCTGGTGTCGGAAAGGAACGGCAATCGTTGCGGGGAGTCTGTCGTGTCCAGCTCCACACAGCCTGACCCAGATCATCGCTCGTCAGATAAACCGACGGAGAAAAGCGGGTACGAAGAAGGAGTTGGAAGTCCATCGATCGTCAGCTCTTCAGGGGAAAGTATAGAGCGAAGAGATGATGCGATAGAGCTGATTCAAGTGGACGTGTTCTATTGTGATATTTGCAGCAAGTTCTGGTTCGCCGGTGACAGACAGTTCCGGAAACACATGACCACTCACAGCAAGCAGGTGTGGGACGATGAGTGCGAGGAGTGTGACGAAATCCTAGAGTCGCCCGAGGACGCGGTCAGACATTACGTTCAAGTTCATTTGAAATCGGAGTTCATCAGGTATTGA
- Protein Sequence
- MIRSVNFLASEIYVQHLFRQNRKFPKILVGSQKLRERIKAKSKEKRKKQLLKNRLVCEKCHEKFPTWWEIREHWISTGHKEPEECRWCRKKTYALQSHLCKEHWDLACMCAFCGQLFMFREGLEQHRQRHDGKQYRCFLCGKRRKSEDLLRRHVFKHYVYERYGCNVCEKRFKKKKNVEKHLKWVHCVCQYCGNTCESKDALREHWKTHDDLKCVLCHKVFSQKNRLKYHYQMRHGHQDFYKCTLCFQRFAMKSKLLEHLKLKHKGYAKISCETCEMPFLYWSQYLRHFEKNHAGPQEKFFCSFCDYSTDHRSKMQWHVEKTSGEGFFCKVCQIRSQCKTKFDEHMKIHEGKRAYSCDYCEKSFATADILKHHMSVKHQEVIIRSHARGHPCFVPGCDRYYMSRSSLTRHMRRSHIEAGVSGSSGQYCADSTVECRFPLVSERNGNRCGESVVSSSTQPDPDHRSSDKPTEKSGYEEGVGSPSIVSSSGESIERRDDAIELIQVDVFYCDICSKFWFAGDRQFRKHMTTHSKQVWDDECEECDEILESPEDAVRHYVQVHLKSEFIRY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -