Fatl075153.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- -
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000024.1:1099868-1104259[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.046 5.9 9.8 0.2 7 21 6 20 6 21 0.94 2 24 0.87 1.1e+02 5.8 0.3 5 21 29 45 27 46 0.91 3 24 0.61 79 6.3 0.2 5 21 79 95 77 96 0.90 4 24 0.61 79 6.3 0.2 5 21 104 120 102 121 0.90 5 24 0.61 79 6.3 0.2 5 21 129 145 127 146 0.90 6 24 0.45 58 6.7 0.0 8 21 150 163 149 164 0.89 7 24 0.87 1.1e+02 5.8 0.3 5 21 190 206 188 207 0.91 8 24 8.5 1.1e+03 2.7 0.4 12 21 408 417 404 418 0.85 9 24 0.033 4.2 10.3 0.2 7 21 421 435 421 436 0.93 10 24 0.046 5.9 9.8 0.2 7 21 439 453 439 454 0.94 11 24 8.5 1.1e+03 2.7 0.4 12 21 487 496 483 497 0.85 12 24 0.34 44 7.1 0.0 8 21 501 514 500 515 0.88 13 24 0.033 4.2 10.3 0.2 7 21 518 532 518 533 0.93 14 24 0.046 5.9 9.8 0.2 7 21 536 550 536 551 0.94 15 24 8.5 1.1e+03 2.7 0.4 12 21 584 593 580 594 0.85 16 24 0.19 25 7.9 0.3 7 21 597 611 597 612 0.94 17 24 8.5 1.1e+03 2.7 0.4 12 21 627 636 623 637 0.85 18 24 0.032 4.2 10.3 0.1 7 21 664 678 664 679 0.93 19 24 0.046 5.9 9.8 0.2 7 21 682 696 682 697 0.94 20 24 8.5 1.1e+03 2.7 0.4 12 21 730 739 726 740 0.85 21 24 0.046 5.9 9.8 0.2 7 21 743 757 743 758 0.94 22 24 8.5 1.1e+03 2.7 0.4 12 21 791 800 787 801 0.85 23 24 0.064 8.2 9.4 0.1 7 21 804 818 804 819 0.93 24 24 0.012 1.5 11.7 0.7 7 23 822 838 822 838 0.96
Sequence Information
- Coding Sequence
- ATGAAGGTACGTACCGACAAGTCCTACACCCACCCCAGCTCGCTGCGGAAACACATGAAGCTCGCTGCGGAAACACATGAAGGTACGTGCCGACAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACATGAAGCTCGCTGGGGAAACACATGAAGGTACGTGCCGACAAGTCCTACACCACCCCAGCTCGCTGGGGAAACACATGAAGCTCGCTGGGGAAACACATGAAGGTACGTGCCGACAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACATGAAGGTCGCTGCGGAAACACATGAAGGTACGTGCCGACAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACATGAAGGTCGCTGCGGAAACACATGAAGGTACGTGCCGACAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTGCCGACGAGCCCTACACCCACCCCAGCTCGCTGCGGAAACACATGAAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTGCCGACAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACATGAAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACATGAAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACATGAAGCTCGCTGGGGAAACACATGAAGGTACGTGCCGACAAGTCCTACACCACCCCAGCTCGCTGGGGAAACACATGAAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACATGAAGCTCGCTGCGGAAACACATGAAGGTACGCACCGACAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACATGAAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACATGAAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTGCCGACAAGTCCTACACCCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTGCCGACAAGTCCTACACCCACCCCAGCTCGCTGCGGAAACACATGAAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTGCCGACGAGCCCTACACCCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTGCCGACAAGTCCTACACCCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCCACCCCAGCTCGCTGCGGAAACACATGAAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCCACCCCAGGTCGCTGCGGAAACACATGAAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACAAGCTCGCTGCGGAAACACATGAAGGTACGTGTCGACAAGTCCTACTCCCATCCCAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCCACCCCAGCTCGCTGCGGAAACACATGAAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCCACCCCAGCTCGCTGCGGAAACACATGAAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTACCGACAAGTCCTGCACCCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTGTCGACAAGTCCTACTCCCATCCCAGCTCGCTGCGGAAACACATGACGGTGCACGGCAACGGCAAGACCTCCCCAGCCGGCTACGACAGCGAGGAGACCAACAGCTCCTCGGCGGAGTCAATCAGCGTGACGGAGCACCACCCGGGGGCGGTGGGTCCGCTGGGGGCGGtgggggcgggggcggcgggggcggcgtcCCCACACCAGGGGGGCGGCACCACCCTCCTCTCCGGCAACATCAGCGAGTGGTACGTCGCCAGCGGCGGCATGCCCACACCTCCTAGCAACGACCACTCGCCCGTCAACCACTtcaaccaccaccaccacccgcaccaccaccaccatcaccaccaccaccacctggCGCCCCACCACGGCGCCACCGCCGCCTACTGA
- Protein Sequence
- MKVRTDKSYTHPSSLRKHMKLAAETHEGTCRQVLHHPSSLRKHMKLAGETHEGTCRQVLHHPSSLGKHMKLAGETHEGTCRQVLHHPSSLRKHMKVAAETHEGTCRQVLHHPSSLRKHMKVAAETHEGTCRQVLHHPSSLRKHMKVRADEPYTHPSSLRKHMKLAAETHEGTYRQVLHPPQLAAETHEGTCRQVLHHPSSLRKHMKLAAETHEGTYRQVLHPPQLAAETHEGTYRQVLHHPSSLRKHMKLAAETHEGTYRQVLHHPSSLRKHMKLAGETHEGTCRQVLHHPSSLGKHMKLAAETHEGTYRQVLHHPSSLRKHMKLAAETHEGTHRQVLHHPSSLRKHMKLAAETHEGTYRQVLHHPSSLRKHMKLAAETHEGTYRQVLHPPQLAAETHEGTYRQVLHHPSSLRKHMKVRADKSYTHPSSLRKHMKVRADKSYTHPSSLRKHMKLAAETHEGTYRQVLHPPQLAAETHEGTYRQVLHHPSSLRKHMKVRADEPYTHPSSLRKHMKVRADKSYTHPSSLRKHMKVRTDKSYTHPSSLRKHMKLAAETHEGTYRQVLHPPQLAAETHEGTYRQVLHHPSSLRKHMKVRTDKSYTHPRSLRKHMKLAAETHEGTYRQVLHHPSSLRKHMKVRTDKSYTTPARCGNTSSLRKHMKVRVDKSYSHPSSLRKHMKVRTDKSYTHPSSLRKHMKLAAETHEGTYRQVLHPPQLAAETHEGTYRQVLHHPSSLRKHMKVRTDKSYTHPSSLRKHMKLAAETHEGTYRQVLHPPQLAAETHEGTYRQVLHHPSSLRKHMKVRTDKSCTHPSSLRKHMKVRVDKSYSHPSSLRKHMTVHGNGKTSPAGYDSEETNSSSAESISVTEHHPGAVGPLGAVGAGAAGAASPHQGGGTTLLSGNISEWYVASGGMPTPPSNDHSPVNHFNHHHHPHHHHHHHHHHLAPHHGATAAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -