Basic Information

Insect: Flexamia atlantica
Gene Symbol: Prdm9
Assembly: GCA_035578135.1
Location: JAQJVK010000023.1:5043495-5065172[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0077 0.99 12.3 0.1 1 21 453 473 453 474 0.94

2 9 0.62 80 6.3 11.8 1 23 506 528 506 528 0.98

3 9 1.1e-05 0.0014 21.2 5.4 1 23 534 556 534 556 0.97

4 9 0.00036 0.047 16.4 5.1 1 23 562 584 562 584 0.99

5 9 0.0016 0.2 14.4 0.1 1 23 590 612 590 612 0.98

6 9 5e-05 0.0065 19.1 0.7 1 23 618 640 618 640 0.99

7 9 1.8e-05 0.0023 20.5 2.2 1 23 646 668 646 668 0.97

8 9 0.0001 0.013 18.2 6.4 1 23 674 696 674 696 0.98

9 9 0.03 3.8 10.4 2.4 1 23 702 725 702 725 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0077	0.99	12.3	0.1	1	21	453	473	453	474	0.94
2	9	0.62	80	6.3	11.8	1	23	506	528	506	528	0.98
3	9	1.1e-05	0.0014	21.2	5.4	1	23	534	556	534	556	0.97
4	9	0.00036	0.047	16.4	5.1	1	23	562	584	562	584	0.99
5	9	0.0016	0.2	14.4	0.1	1	23	590	612	590	612	0.98
6	9	5e-05	0.0065	19.1	0.7	1	23	618	640	618	640	0.99
7	9	1.8e-05	0.0023	20.5	2.2	1	23	646	668	646	668	0.97
8	9	0.0001	0.013	18.2	6.4	1	23	674	696	674	696	0.98
9	9	0.03	3.8	10.4	2.4	1	23	702	725	702	725	0.98

Sequence Information

Coding Sequence: ATGGAGAGCCTGGAGGAGGAGAAAGTGTTATTCCCCACTGAAGCTGAAGTCAAATCGTACTTTCCTGATGAAGTCTGGAATGCTATGTCCGAGTACGAAAGAAAAACTTACCAGAACCTGTTACATAACTACAATGTTATGAGATTCTTAGCTCTGGTGTTTATCAATGCAGCATCTAGCAAGAAGTCATCTGTTGTTTTTCCTGACCCCAAACCTCTTACCCCGAAAGAACgTCTGGTGTTCTTTCCCATGCCCAAGCCCAAGAAACCCAAGCAGCCTCCTCCTTCCTCTCAGTCTGATCCCAGCAAGAAAGTCAGTAAGTCAGATAAGACTGTGTCGGTCACTGATGTGGATAAGACTGCCTCAGTCACTGACGCGGACAAAGTTGCCTCAGACATTGACGCTAATGTCGCCGGCGGTCCCTCGCCTCTTGAACAGCCAGATAAAGGAGCCACAGTGACTACAGCAGCAGCCAGGGAAGCTGTCAGGGACAGGACTGACGCCAGCTCAGAGGACGAGTTTGGCTTCTACGCCATGTTCGGTGGAAAACATGATGCCCCCGCTACCAAGAGCTCAACATCCAAGCCGCAGCCCCGACCCCAGCCTGTGGACCCGGCTGTCCCTGGCTGTTCCTTCTGGCCCTCCCCACGTGGTAATAGAGCTGCATCAAAATCAACCACAACCGAGCCGTCAGAACTATCTGATGAAGACGAGTTTGGTTTTGCTCAGATAGAAAGAGAGAGAAGAAGATACCCCAGACGAGCAGTGCCTGTTGTAAATTATACTGAAGCTGAGCTGCTGAAAGATGATGAATATCTTTTCTGTGACTTGTGTGACAGAGAGTATGAAGGAGACTGCCCTGAGCATGGCCCTCACACATTCTTCCCTGACAGATTCGTTCCTGTCACCGGTGATGATAAAAGAGCAATCGAGACTACGCCTGCCATGTTGAAGGTTGACAAGTCCAAGATACCAGGAGCAGGCAGTGGAGTGTGGACCAAGTACGGGGTGCCTCCTCATGTTAGgacgtaccgttacGAGGGAGATGAGGCCCCTGAGCCTGACCCTCTGGGATACAGCTGGGGTATCGTGAAGGATAAGCGGGTACACCATTATGTGGCCGCGCACTCGACTGCAACAAGTAACTGGATGCGATTTGTAAACTGTGCACGACATGAAACTGAGCAAAACCTGATGGCCTTCCAATTTAAGGGCCAAATGTTCTACAGGACTGTGAAGCTAATTCCTCCCAAGGCCGAGCTCTTTGTCTGGTACGGCAAGGAATATGCCGAGATGCTGGGGATATCCATGGAGAGTTTCCGCAGTAAAGACACTAGTCACCTCCGTAACCTGGTGTTTCCCTGCAACAAATGCAATGTAACGTACACATCTCCGTTGTACCTGGAGGCCCATGGGAGGAGGTGCAGAGGTGAGAGAGCCGCAGTGAGAGTGGAGCCTTCCCAGGTCCCGACCGATGTGCAGACCCTGGCAGTGGTTGTGGACGGCAGGAAGACTTACTGCTGCAACCTCTGCTCCTACAAGACTACACACTGTAGTCATATGAAGAACCACATCATGACTCACAGCAGAGTGATGCCTCACCACTGTGATGTCTGTGGGAAAGGATTTACACGAGCTAGTCACCTTAACACACACAAACGTATCCACACTGGGGACAAGCCTTACAAATGTAGCCAGTGTTCTTTTTCATGCAGTGACAGCAGTAGTCTCAGCAAGCACATGACCCGCCACACTGGGGAGAAGGCCTACGCATGTCCAGAGTGTGACTACAAGACTGCAGTCAGCGGCGACATGGAGAGACACTCCCGCACTCACAGTAGAGTCAAGCCTTACAGCTGCACTCTGTGTCAGTACAGAGCTGCTCGGAGCAGTGCCTTGACCTCACACATGAGAACACACACTGGGGAGAAGCCCCACGCTTGTCCACACTGTCAGTACAGAGCTGCTACCTCTAGTAACTTGACTGTACACATGAGAACCCACACTGGGGAGAAGCCACACTCTTGTCCACACTGTGAGTACAGGACAACTCACAGCAGTGCCTTGACCTCACACATGAGAACCCACACTGGGGAGAAGCCCTACACTTGCCCACACTGTCAGTACAGGACTGCATGGAAGGGGGAATTTAACAAACACATCAACAGAAAACACCCCACACAGCAGTGA
Protein Sequence: MESLEEEKVLFPTEAEVKSYFPDEVWNAMSEYERKTYQNLLHNYNVMRFLALVFINAASSKKSSVVFPDPKPLTPKERLVFFPMPKPKKPKQPPPSSQSDPSKKVSKSDKTVSVTDVDKTASVTDADKVASDIDANVAGGPSPLEQPDKGATVTTAAAREAVRDRTDASSEDEFGFYAMFGGKHDAPATKSSTSKPQPRPQPVDPAVPGCSFWPSPRGNRAASKSTTTEPSELSDEDEFGFAQIERERRRYPRRAVPVVNYTEAELLKDDEYLFCDLCDREYEGDCPEHGPHTFFPDRFVPVTGDDKRAIETTPAMLKVDKSKIPGAGSGVWTKYGVPPHVRTYRYEGDEAPEPDPLGYSWGIVKDKRVHHYVAAHSTATSNWMRFVNCARHETEQNLMAFQFKGQMFYRTVKLIPPKAELFVWYGKEYAEMLGISMESFRSKDTSHLRNLVFPCNKCNVTYTSPLYLEAHGRRCRGERAAVRVEPSQVPTDVQTLAVVVDGRKTYCCNLCSYKTTHCSHMKNHIMTHSRVMPHHCDVCGKGFTRASHLNTHKRIHTGDKPYKCSQCSFSCSDSSSLSKHMTRHTGEKAYACPECDYKTAVSGDMERHSRTHSRVKPYSCTLCQYRAARSSALTSHMRTHTGEKPHACPHCQYRAATSSNLTVHMRTHTGEKPHSCPHCEYRTTHSSALTSHMRTHTGEKPYTCPHCQYRTAWKGEFNKHINRKHPTQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -