Basic Information

Insect: Flexamia atlantica
Gene Symbol: lola
Assembly: GCA_035578135.1
Location: JAQJVK010000021.1:6214688-6229411[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.001 0.13 15.0 0.4 1 20 17 36 17 38 0.95

2 14 0.00014 0.018 17.7 3.2 1 23 45 67 45 67 0.98

3 14 0.019 2.4 11.1 0.1 2 20 84 102 83 104 0.94

4 14 0.12 15 8.5 4.2 1 20 111 130 111 132 0.95

5 14 0.00035 0.045 16.5 1.0 1 21 143 163 143 164 0.97

6 14 0.013 1.7 11.6 7.6 1 23 172 195 172 195 0.97

7 14 0.0031 0.4 13.5 3.8 1 23 204 227 204 227 0.96

8 14 0.00013 0.016 17.9 5.4 1 21 252 272 252 273 0.95

9 14 0.021 2.7 10.9 5.2 1 23 281 304 281 304 0.92

10 14 1.7 2.1e+02 4.9 0.2 2 12 316 326 315 333 0.78

11 14 1.2 1.5e+02 5.4 5.9 1 19 341 359 341 364 0.95

12 14 0.0046 0.59 13.0 1.0 1 20 442 461 442 463 0.95

13 14 3.6e-05 0.0046 19.6 0.8 1 21 516 536 516 537 0.95

14 14 0.0045 0.57 13.0 0.7 1 23 545 568 545 568 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.001	0.13	15.0	0.4	1	20	17	36	17	38	0.95
2	14	0.00014	0.018	17.7	3.2	1	23	45	67	45	67	0.98
3	14	0.019	2.4	11.1	0.1	2	20	84	102	83	104	0.94
4	14	0.12	15	8.5	4.2	1	20	111	130	111	132	0.95
5	14	0.00035	0.045	16.5	1.0	1	21	143	163	143	164	0.97
6	14	0.013	1.7	11.6	7.6	1	23	172	195	172	195	0.97
7	14	0.0031	0.4	13.5	3.8	1	23	204	227	204	227	0.96
8	14	0.00013	0.016	17.9	5.4	1	21	252	272	252	273	0.95
9	14	0.021	2.7	10.9	5.2	1	23	281	304	281	304	0.92
10	14	1.7	2.1e+02	4.9	0.2	2	12	316	326	315	333	0.78
11	14	1.2	1.5e+02	5.4	5.9	1	19	341	359	341	364	0.95
12	14	0.0046	0.59	13.0	1.0	1	20	442	461	442	463	0.95
13	14	3.6e-05	0.0046	19.6	0.8	1	21	516	536	516	537	0.95
14	14	0.0045	0.57	13.0	0.7	1	23	545	568	545	568	0.94

Sequence Information

Coding Sequence: ATGACAACTCCGGTAAGTACTCTAGGAGGAGACGAAGTGGAGGAAAGCTTCACTTGTAGTAGATGTTCAAGGACGTTTAAGACGCAAGATGTTCTGATATCACATATTTACATCGACTGCAGCCCAGACCCCTACAAATGCACAAAATGCAAACTCCGGTTTAAGTCCAAAATCGACCTGTTCAAGCACGTCTTGAGCCACAATCAAGatgTCACAGAATCTAAAGAGGTTGGCAAACCGCTCTCGTTGTCTTGTCCAATGTGTGCCATGAATTTCGCCAATGAGGATTCACTCCACCGACACATTTTCTACGAATGTGGCGCGAGATCACACAAGTGCCCCAGGTGTTCGTGCAAGTTCTTCACGGAAACCAGCCTGCGCAAACATGTCGTTAAAAATCGATGCAGGATACCGgGTAACGAATTGTTTGAATGTCCTACGTGCGAAAGGGCCTACAGAAGCTACCAGACTCTGCGGAAACACCAACGCTTTGAGTGTCAGAAAGAGCCCCAGTTTGCATGCTCTTACTGCGAGTACAAGGCCAAGCGCAAACATCACcttaaaaatcattataaaacaaaacataaTGTATGTGGGCTGTCGCCGCGGTTCGCCTGCCCGCGCTGCGACTACAAGACGGGCTACAAGTACCACCTCAGGCGCCACTACCTCACCAAGCACGAGAAATTTAAGTTAACGTTCACCAAGCGTATCACAGTAAGCGTGTTGTTGCCAGAAGGAGGCTCGGGTCGCCACAACTGCCCGCAGTGCGACCGCAGCTACAAGCACCGCCACAACCTCACCAAGCACCTGCGGTTCGAGTGCTGCAAGGAGCCCATGTTCAACTGCCACGTGTGCCCGTACCGGGCCAAGCGCAAGGCGCACCTCAAGAACCACTACCTCTTCAAACACAGCCTGTTCACCGACGACTTCAGCAAGAGGTCCACGTGCCTAACGTGCGGGAAGACCTACACGTACCTTCTGAAGCACGTCCGTCTGGAGTGTGACCAACTGCAGCAGTTCCCGTGTCCGCTGTGCACACACAAGGCCAAGAGACGAGACCACCTGGAGAAGCACTGCTTCCTCAAGCACAACCTCGTCCTCAACTACAGTTCCCGTGTCCGCTGTGCACACACAAGGCCAAGAGACGAGACCACCTGGAGAAGCACTGCTTCCTCAAGCACAACCTCGTCCTCAACTACAGTTCCCGTGTCCGCTGTGCACGCACAAGGCCAAGAGACGAGACCACCTGGAGAAGCACTGCTTCCTCAAGCACAACCTCGTCCTCAAGTGATACACAGTCCGTGGTGTGACAAGCTACAGTTCCCGTGTCCGCTGTGCACGTACAAGGCCAAGAGACGAGACCACCTGGAGAAGCACTTGATACACAGTCCGTGGTGTGACAAGCTACAGTTCCCGTGTCCGCTGTGCACGTACAAGGCCAAGAGACGAGACCATCCTGGAGAAACACTGTTTCCTCAAGCACAACCTCGTCCTCAAGTGATACACAGTCCGTGGTGTGACAAGCTACAGTTCCCGTGTCAGCACGTATGCGAGCAGTGTGGGCGGCGGTACCGGCAGCGCTACAACCTCCTGGTACACCAGCGACTGGAGTGTAACAAGGAGCCGCAGTTCGCCTGCAGCCTGTGTCCCTACCGCGCCAAGCGGAAGACCACGCTCAAGACCCACATGGGCATCAAGCACGCGGTATATGGCGAGGAGTTCTGCAAGACCGCCTACAACCCTTGA
Protein Sequence: MTTPVSTLGGDEVEESFTCSRCSRTFKTQDVLISHIYIDCSPDPYKCTKCKLRFKSKIDLFKHVLSHNQDVTESKEVGKPLSLSCPMCAMNFANEDSLHRHIFYECGARSHKCPRCSCKFFTETSLRKHVVKNRCRIPGNELFECPTCERAYRSYQTLRKHQRFECQKEPQFACSYCEYKAKRKHHLKNHYKTKHNVCGLSPRFACPRCDYKTGYKYHLRRHYLTKHEKFKLTFTKRITVSVLLPEGGSGRHNCPQCDRSYKHRHNLTKHLRFECCKEPMFNCHVCPYRAKRKAHLKNHYLFKHSLFTDDFSKRSTCLTCGKTYTYLLKHVRLECDQLQQFPCPLCTHKAKRRDHLEKHCFLKHNLVLNYSSRVRCAHTRPRDETTWRSTASSSTTSSSTTVPVSAVHAQGQETRPPGEALLPQAQPRPQVIHSPWCDKLQFPCPLCTYKAKRRDHLEKHLIHSPWCDKLQFPCPLCTYKAKRRDHPGETLFPQAQPRPQVIHSPWCDKLQFPCQHVCEQCGRRYRQRYNLLVHQRLECNKEPQFACSLCPYRAKRKTTLKTHMGIKHAVYGEEFCKTAYNP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -