Basic Information

Insect: Flexamia atlantica
Gene Symbol: Tmco4
Assembly: GCA_035578135.1
Location: JAQJVK010000018.1:6995001-7024161[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.25 32 7.5 0.4 2 21 348 367 347 368 0.92

2 8 5.6e-05 0.0072 19.0 2.2 1 23 390 412 390 412 0.98

3 8 5e-06 0.00064 22.3 3.3 1 23 418 440 418 440 0.98

4 8 9.3e-06 0.0012 21.4 0.1 1 23 451 473 451 473 0.99

5 8 6.5e-06 0.00083 21.9 3.7 1 23 479 501 479 501 0.96

6 8 0.036 4.6 10.2 0.1 3 23 509 529 507 529 0.98

7 8 0.0015 0.19 14.5 1.1 1 23 535 557 535 557 0.97

8 8 4.4e-05 0.0056 19.3 0.1 2 20 564 582 563 583 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.25	32	7.5	0.4	2	21	348	367	347	368	0.92
2	8	5.6e-05	0.0072	19.0	2.2	1	23	390	412	390	412	0.98
3	8	5e-06	0.00064	22.3	3.3	1	23	418	440	418	440	0.98
4	8	9.3e-06	0.0012	21.4	0.1	1	23	451	473	451	473	0.99
5	8	6.5e-06	0.00083	21.9	3.7	1	23	479	501	479	501	0.96
6	8	0.036	4.6	10.2	0.1	3	23	509	529	507	529	0.98
7	8	0.0015	0.19	14.5	1.1	1	23	535	557	535	557	0.97
8	8	4.4e-05	0.0056	19.3	0.1	2	20	564	582	563	583	0.95

Sequence Information

Coding Sequence: ATGACTGCGATCGGGAGGCGGCTACACTGTACGACGCGACGCGGTGAAATGCCTACAATCGGGAGGCGGCTACCCGCTCAACAACGGACTGAGATGGCGGAGGCAGGCAACTGCGAAGGCATCATCCAGGATGCGGTGCTGATTGGGGCTCCGTGCTCCGGGAACCCCGAATACTGGAAGAAATTCACTCGAGTGGTTGCGGGAAGGCTCGTGAATGGATACTGCAAgAACGATTGGTTGCTGAAGTTCTTGTACAGGACGTTTTCCATGCCCAGTCACAGTGTCGCGGGACTTCATCCGATACAGCTGGAGGATCGGAGGATGGTCAATGTCGACCTCACCGACATTGTCAATGGCCACAGCGAGTACCCGGACAAGATCTGCCTGATCCTGCGTCAGATGAAGGTGCGCGTGAAGGACGGGCCGTGCGGCGGCGGCAAGGAGAAGGTGCCCCGGGTGCAGACCATGGAGCAGATATCACCCACCAAGACGGTACGAGCTGCCAATTCAGTTTTCTGTACTACATCCTGTACTCTTGAGGTTTGCTCAGAAAATAGCATCTACTGCTCGACTTCAAATGCTGAAGAAGAGCCCGTCATCAAAGTAGAACCCACTGAGCATTATGAAGAAGACACAGGCTCAGATGGAATTGTATCTTCGCTAGAAGGAGGTGACGATGGTTTACCGCTTGATGTACAGATTTCAGAGCCAGAAGTTGGAAACGATTCTGAAAATGAAACAGTTGATATTGATGTAGAGGAATTGCCGGTTAAAACAGAACCCATTGAATGTAAGGAAGAATGGCTCTCAGAAGGTGATGAAAGCAACACTTATGCCCAAATAAAGGCAGAACCTTTAGAAGAGGGCTTTGAAGATCGAATAAATGATTTTGTAAAGATTTTTACCAAAGAAAAACTGCCAGTTCAAATTTTGAGTGATGATTTTAGTCCTACAAATGGTTTGGAAATTGAAGGTGGAGATGAAAATGGACATTTTCTTTCTCAGGTTAAACCGAAATGCAAGAGGAAGGGTGGGAGTCTACAGTGTGCCGAGTGCTCGGCCAAGTTTAAATACCAGAGCACGTACGATTACCACGTCAAGTCAGCCTGCGGGACCAAGATGATCGCTCGCGACCAGCTGGTGAAGAAGTCGGGGAAACGTGAGACTTTCGAGTGCAACGTTTGCCAGAAGAAAGTCTGCAGTCGAACGAGCCTCATGGTTCACATGCGCATTCATAATGGAGAGAGACCGTTTACCTGCGACATTTGTACCCGTTCTTTTTACCAAAAGGCACATTTGAAAGACCACATAAAATCTCACCTAGATGGAAAGCCGGGGGCGCCTCTCTTCTACACTTGCGCCGAGTGCGGGAACGTCTACTCCAACAAAGCCTTGCTCACTTCTCACATGAACGTTCATTTCGGCGACAAAATCTTCGACTGCAACGTGTGCCATAAACGTTTCCGCACCCGATCAAATCTCAACAAccacaaaattattcatttggGTAAGAAGCCTTTCGGTTGTTCGGTCTGCGGAAAAGAATTTCTGCGGGGCAAAGGCCTCGACGATCACATGAGAATTCATACTCAAGAGAAACCTTTCGAGTGCGAAATCTGCGGGAAGCGGTTTGCGGAGAAGAATCGAAGGAACACCCATGTGAAGCGACACACGGGGGAGTTGAACCAGGTCTGTCCGACTTGTGGGAAGAAGTTCGCCAGCTCGTACGATCTCAGAGTTCACCAGGTGTGGTATGTTAGACTGTTTTTAATGTTGGTTTCAGCAGATAAGCATCATTAG
Protein Sequence: MTAIGRRLHCTTRRGEMPTIGRRLPAQQRTEMAEAGNCEGIIQDAVLIGAPCSGNPEYWKKFTRVVAGRLVNGYCKNDWLLKFLYRTFSMPSHSVAGLHPIQLEDRRMVNVDLTDIVNGHSEYPDKICLILRQMKVRVKDGPCGGGKEKVPRVQTMEQISPTKTVRAANSVFCTTSCTLEVCSENSIYCSTSNAEEEPVIKVEPTEHYEEDTGSDGIVSSLEGGDDGLPLDVQISEPEVGNDSENETVDIDVEELPVKTEPIECKEEWLSEGDESNTYAQIKAEPLEEGFEDRINDFVKIFTKEKLPVQILSDDFSPTNGLEIEGGDENGHFLSQVKPKCKRKGGSLQCAECSAKFKYQSTYDYHVKSACGTKMIARDQLVKKSGKRETFECNVCQKKVCSRTSLMVHMRIHNGERPFTCDICTRSFYQKAHLKDHIKSHLDGKPGAPLFYTCAECGNVYSNKALLTSHMNVHFGDKIFDCNVCHKRFRTRSNLNNHKIIHLGKKPFGCSVCGKEFLRGKGLDDHMRIHTQEKPFECEICGKRFAEKNRRNTHVKRHTGELNQVCPTCGKKFASSYDLRVHQVWYVRLFLMLVSADKHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -