Fatl075152.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- -
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000024.1:1098728-1099765[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0017 0.22 14.3 2.2 1 23 8 32 8 32 0.96 2 14 8e-06 0.001 21.7 0.7 1 21 38 60 38 61 0.92 3 14 0.018 2.3 11.1 0.1 7 21 64 78 64 79 0.93 4 14 0.018 2.3 11.1 0.1 7 21 82 96 82 97 0.93 5 14 0.049 6.2 9.7 0.1 8 21 101 114 100 115 0.93 6 14 0.024 3.1 10.7 0.2 7 21 118 132 118 133 0.93 7 14 1.1 1.5e+02 5.4 0.1 6 21 142 157 140 158 0.85 8 14 0.16 21 8.1 0.0 7 21 161 175 161 176 0.93 9 14 0.039 5 10.0 0.0 7 22 179 194 179 194 0.93 10 14 0.13 17 8.4 0.1 7 21 197 211 197 212 0.93 11 14 0.014 1.8 11.5 1.0 7 23 233 251 233 251 0.89 12 14 0.13 17 8.4 0.4 8 21 247 260 247 261 0.93 13 14 0.033 4.2 10.3 0.1 7 21 264 278 264 279 0.93 14 14 0.018 2.3 11.1 0.1 7 21 282 296 282 297 0.93
Sequence Information
- Coding Sequence
- atgattccAGGGGAGAAACCTTTCAAGTGCGAGTACGCAGGGTGTGACCGAAGGTTCGCCAACAGCTCGGACCGCAAGAAGCACTCGCACGTCCACACGTCCGACAAGCCGTACAACTGCCGAGTCAGCGGCTGCGACAAGTCCTACACCCACCCTAGCTCGCTGCGGAAACACATGAAGGTACGTGCCGACAAGTCCTGCACCCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTGCCGACAAGTCCTGCACCCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTGCCGCCAAGTCCTGCACCCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTGCCGACAAGTCCTGCACCCACCCCAGCTCGCTGCGGAAACACATGAAGCTCGCTGCGGAAACACATGAAGGTACGTGCCGACAAGTCCTACACCCACCCAGCTCGCTGCGGAAACACATGAAGGTACGTGCCGACAAGTCCTACACCCACCCCAGCCCGCTGCGGAATCACATGAAGGTACGTGCCGACAAGTCCTACACCCACCCCAGCTGGCTGCGGAATCACATAAGGGTACGTGCCGACAAGTCCTACACCCACCCCTGCTCGCTGCGGAATCACATGAAGGTACGTGCCGACAAGTCCCACACCCACCCCAGCCCGCTGCGGAATCACATGAAGGTACGTACCGACAAGTCCTGCACCCACCCCAGCTCGCTGCGGAAACACATGAAGTCCTACACCCACCCCAGGTCGCTGCGGAAACACATGAAGGTACGTGCCGACAAGTCCTACACCCACCCCAGCTGGCTGCGGAATCACATGAAGGTACGTACCGACAAGTCCTGCACCCACCCCAGCTCGCTGCGGAAACACATGAAGGTACGTGCCGCCAAGTCCTACACCACCCCAGCTCGCTGCGGAAACACATGA
- Protein Sequence
- MIPGEKPFKCEYAGCDRRFANSSDRKKHSHVHTSDKPYNCRVSGCDKSYTHPSSLRKHMKVRADKSCTHPSSLRKHMKVRADKSCTHPSSLRKHMKVRAAKSCTHPSSLRKHMKVRADKSCTHPSSLRKHMKLAAETHEGTCRQVLHPPSSLRKHMKVRADKSYTHPSPLRNHMKVRADKSYTHPSWLRNHIRVRADKSYTHPCSLRNHMKVRADKSHTHPSPLRNHMKVRTDKSCTHPSSLRKHMKSYTHPRSLRKHMKVRADKSYTHPSWLRNHMKVRTDKSCTHPSSLRKHMKVRAAKSYTTPARCGNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -