Fatl072906.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- -
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000021.1:5939549-5986649[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.58 75 6.4 1.0 6 21 69 84 67 85 0.93 2 17 0.039 5 10.0 0.5 1 23 93 116 93 116 0.97 3 17 0.16 21 8.1 1.0 5 21 131 147 130 148 0.94 4 17 3.4e-06 0.00043 22.8 2.5 1 23 156 179 156 179 0.95 5 17 0.076 9.8 9.1 0.6 6 21 280 295 279 296 0.96 6 17 0.073 9.4 9.2 0.5 1 20 317 336 317 338 0.95 7 17 1.8e-05 0.0023 20.6 2.0 1 23 346 369 346 369 0.97 8 17 5.5 7e+02 3.3 1.1 5 21 390 406 381 407 0.89 9 17 7.7 9.8e+02 2.8 4.4 2 19 416 433 415 438 0.89 10 17 0.00056 0.073 15.8 5.3 1 23 454 477 454 477 0.96 11 17 0.012 1.5 11.7 0.7 3 21 505 523 503 524 0.94 12 17 0.0011 0.14 15.0 0.1 1 22 532 553 532 553 0.95 13 17 5.6e-05 0.0072 19.0 2.8 1 19 615 633 615 635 0.96 14 17 0.012 1.5 11.7 5.2 1 20 653 672 653 674 0.95 15 17 1.7 2.1e+02 4.9 1.3 1 21 683 703 683 704 0.84 16 17 0.016 2.1 11.2 0.1 1 23 761 785 761 785 0.93 17 17 0.00024 0.031 17.0 0.0 2 23 827 849 826 849 0.95
Sequence Information
- Coding Sequence
- ATGGTGCTGATTGAGGAAGAGTGTGGTGCTTGCGATCGGGAGCATGAAATTAGGCGGGCCAACCTTTACCAATTAGAACGGTCGGCTCGACTGTTCCAGCTTCTCAACTCCCTCCACTCTGCGAGGGTGAATGCGACAGTCGCCCGGATGAAGACAAACTCCAGAGAAAGCCGCAGTTCGGAAGAAGCTCCGTTCTCGTGCAGTTGCGGCCGGAGTTACGTGCACTACAACTCGCTCTGGAGGCACAAGAAGTACGAGTGTAACAAGACGCCGCAGTTCCACTGCGTCATGTGTCCGGCTAAGTACATGCAGAAGAACGCGCTGGAGATCCACGTGAGAGTGAAGCACGGAGCGAGCGGCCGGTCCTACTCGCCAGGAGTGTACGCTTGCGACTGCGGCCGCCAGTATCGCCACTCGACGTCGCTTGCGTCACATCGTCGCTACGAGTGTGGCAAGTCTCCGCAGTTTGCGTGTCCACATTGCGACAAGCGGTTTTATCGCAAGGCCCAGCTACAGAGTCACATGGTGCGTAGGCACACCTTCCCTCGCTCGGGACATGTCAATGAAGGGCTGCATGAAGAAGCCACGAATACAGATACGTCATTCCTCGAAGTACTCAAGAAGCAAGAATTAGACCTGCACGAGAGGACGGATTCCCTCTCGGAAGGGGAGTCGGTCTACCCTCGACTGAGGGAGTACGATACTCCAGCGCAAAATCAGCTGGCCGCGGAGATATTCGCGCTGGAGAGGAGTCTGGACAGTGCCATCCGTGCTAGGGAGCTCGGAATGACCGAGGGTCTTAAGTCTCAGTTCGAAATAACCGAGACCATTAGAGCCTGCGGAAAACTTTACACCCACCAACGTTCGTTGCAGAGGCACTACAGGTTCGAGTGTTCCGGAGAACGCAACTTCACTTGTGGCGTTTGCAAGAAGACGGTCAGCCCTCAGTTCCGTTGCCCCCGCTGTTTCCGCAGCTACACTTGGCGCCAGACGCTGGCCCGCCACATGGCGTACGAGTGCCTCGGCGAGCCCCGCTTCCCCTGCCTCGTCTGCCCCACGCGGTTCAAGCAGCGCGGCCATCTGCTGCGGCACATGAAGAAACTGCACCCCTTCCAGCTCGACTTGTACTACCAGAGCAAAGGGTGCAATAAGTCGTCGTACACCTGCGTGTGTGGGAAGCAGTACCTGCACAGCGGTTCGCTCTGGCGGCATAGGAAGTACGAGTGTGGAAAAGCGGCCCAGCTCATGTGTCCGTGCTGCTCCGCTCGGTTCAAGCAGAAAGCCAATTTCAAGACCCACTGCGCTGTCAAGCACGGGATGGGCGGAGAGGCAAAGTTTGAGTGCAACAAGGACCCCAGATACAGATGCAAGTTGTGCAACGGCAAGTTTAAACACAAGTCCAACCTCAAGAGCCATTACATCAGCAGACACAAGACGCTCCCTGATGTCGACGGAGCGATCCACCTTGACATGTGGATTGCGGGGCTGGAGGTGGGGTCGCAGCAGTTTGGGTGCGCCACGTGCGGGAAGCTGTACCGCCGCAGTCGCAGCCTCTGGCGCCACCGCAAGTTCGAGTGTCAGAAAGCCCCCGCCTTCCGCTGCCCCGCCTGCCCCGCCAGCTTCTACCAGAAGGTCAACCTCAAGATCCACGTCATGACCCgtggaGGACCACCCTCGCCCCTGAATGAGCCAGACGAAGACGAGAACGCGATGCTGGAGCTGATGACTGACCAGATGCCACTAGAAGGGATACCCGATAATGACGAGCCTGGAGATAACACTCCAACGTTTTCAGGAAAGCCAAGGGCGCTGAAACCCGAGGGAACCGGTCCTGTCAAACCGTACCAGTGTCCGGTCTGCGACAAGTCCTTTGCCCAGAAGTATTACCTGATCCACCACTCCTGCGACGCACCTGCTGACAATCCCAAGCCTTACGGGTCGCTGGGGAAACCGCCTTTCACCTGTGAAGGCTGCGGGGTGATTTACAAACACAAGTCCTCGTACTGCAGGCACATCCACCATGAGTGCGGCAGGGGGAGGAAGTTTTTCAAGTGCTCTGACTGCACAGTGATATTCACCAGTGACGAAGCTCATGCCAAACACATCTGTACTGCAAAACCTCTCGAGATATCAATATTGGGAAAACCCACGGAGACTCCTAAAAAGTTTAAATCAGTCAACCCGGAACTGGCCAAAAATACGTCTCAAATCAaGTTCAAATATGTTGCTGTAGCTGGGACATCAGATCCCACCACTCAAGACACCGGTTTCATCGTCTTCTTTCAGTGCTCCGCCTGTACGTTGGTGTTCAGCGATGAAGTCTCCCTCGACAACCACATCTTGACATACAAGCACAAGCAGTCATACTGTAGACACATCCACCATGAATGCGGAAAAGGGAGGAAGTTTTACAAGACTTACAGCGGGAAATATGTTgggaagaaaaagaagaagaaggaagAAACTCCTCAGAAGCAAGTGTGTAGTGTGTGCAACAAAGAGTTCGATGATCAAGAATCTTTGGAAGTTCATGTTCAAGTGGACCACTTGAGTCTGTAA
- Protein Sequence
- MVLIEEECGACDREHEIRRANLYQLERSARLFQLLNSLHSARVNATVARMKTNSRESRSSEEAPFSCSCGRSYVHYNSLWRHKKYECNKTPQFHCVMCPAKYMQKNALEIHVRVKHGASGRSYSPGVYACDCGRQYRHSTSLASHRRYECGKSPQFACPHCDKRFYRKAQLQSHMVRRHTFPRSGHVNEGLHEEATNTDTSFLEVLKKQELDLHERTDSLSEGESVYPRLREYDTPAQNQLAAEIFALERSLDSAIRARELGMTEGLKSQFEITETIRACGKLYTHQRSLQRHYRFECSGERNFTCGVCKKTVSPQFRCPRCFRSYTWRQTLARHMAYECLGEPRFPCLVCPTRFKQRGHLLRHMKKLHPFQLDLYYQSKGCNKSSYTCVCGKQYLHSGSLWRHRKYECGKAAQLMCPCCSARFKQKANFKTHCAVKHGMGGEAKFECNKDPRYRCKLCNGKFKHKSNLKSHYISRHKTLPDVDGAIHLDMWIAGLEVGSQQFGCATCGKLYRRSRSLWRHRKFECQKAPAFRCPACPASFYQKVNLKIHVMTRGGPPSPLNEPDEDENAMLELMTDQMPLEGIPDNDEPGDNTPTFSGKPRALKPEGTGPVKPYQCPVCDKSFAQKYYLIHHSCDAPADNPKPYGSLGKPPFTCEGCGVIYKHKSSYCRHIHHECGRGRKFFKCSDCTVIFTSDEAHAKHICTAKPLEISILGKPTETPKKFKSVNPELAKNTSQIKFKYVAVAGTSDPTTQDTGFIVFFQCSACTLVFSDEVSLDNHILTYKHKQSYCRHIHHECGKGRKFYKTYSGKYVGKKKKKKEETPQKQVCSVCNKEFDDQESLEVHVQVDHLSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -