Fatl023373.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- prdm10
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000003.1:21597898-21637034[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.015 2 11.3 1.8 2 19 290 307 289 311 0.92 2 14 3.2e-05 0.0041 19.8 0.3 1 23 319 342 319 342 0.96 3 14 0.0042 0.54 13.1 7.5 1 23 348 371 348 371 0.98 4 14 0.031 4 10.3 0.6 2 23 391 412 390 412 0.96 5 14 0.0077 0.99 12.3 0.4 2 23 450 471 449 471 0.94 6 14 0.014 1.8 11.5 0.7 2 23 483 504 482 504 0.94 7 14 0.052 6.7 9.7 3.1 2 23 513 534 512 534 0.96 8 14 0.12 15 8.5 0.2 2 23 541 562 540 562 0.96 9 14 0.00028 0.036 16.8 1.1 1 23 568 591 568 591 0.96 10 14 2.2e-05 0.0029 20.2 1.2 1 23 596 618 596 618 0.96 11 14 4e-06 0.00051 22.6 1.8 1 23 624 647 624 647 0.95 12 14 0.12 15 8.5 1.6 1 23 682 705 682 705 0.95 13 14 0.00047 0.06 16.1 2.3 1 23 727 750 727 750 0.97 14 14 0.0077 0.99 12.3 5.5 1 23 788 811 788 811 0.97
Sequence Information
- Coding Sequence
- ATGACTCTTCCTCTTGAAAAGATACCAAGAGAATATTTGGTGTCAGCAAGACCTCAGAATGGCGATGTCACGACTGAAGACCCCGGGCAAACTAGCCTGCAAGACGAAAACGAACAAGATGAGAACGGTCACCTACGCACCTTATATAATACGCTTAAAGAACAAGGACTTATCATCGAGCTGAGGCTGCAAGATCAGAACCAGCAGCTGATCGACCAGTCACTGTCGCTACCCGAGCTGCAGAATTTCTCCGAACAACAGAGCAGCTTCCCACAACCTCTGGCCGAGTCTGCTCCCGAGCCCGCTGTGGAGTTGCAGCCACTAGAGCCTGTCGAGAGGCGATTTTGGTGTGAGGAGTGCAACGTGCTCATGGACGCGGACTGTGCGGAACACCAGGTGAACCGGAAGATCAGCGACAAAGCCGTGCCTTCGCGAGCTCGGGCGACGCTGCCCGCCAGCTACCTGGCCATCAACAGGGTACCCGATACGGACAAGGAGGAATACGGCGTGTTCGCGCGCAAGACGATCCCAAAGCGCACCCAGTTCGGCCCCATCGAGGGGGTGCTGTTCAAGTCAGAGGAGGAGGTAGTGGTGGCGGCCGAGCCCCGGCTGGAACTCACCATCGAGACCGAGAACGGCGACTTCCGTGTGCTCGACGTCTCCAACGAACACATGTCCAACTGGATGCGGTTCGTGAGGTGCGCCACCAACGAGCGGCCGCCCAACCTGCTCCTGTCGCAGCTCGGCAACTCCCTGTACTTCACCACCACCCAGATGATCCACCAGCGCGAGGAGCTGCTGGTGTGGTACAGCCCGTCCTACGCTGTCAGGCGCAACCTGCCCGCCGACCCCCCGCAGATAGaATGGCCCTGTTCAACTTGTGGGAAAAAGCTGAAAACTGCAGAAGAATTGACTAAACATTCTAACTGTCACAAACCAGTTGTGAAGTTGAAGTACGAGTGTGCCATTTGCAACAAGAGATTTCCGAGAGGCTACAGCCTGAAGCGGCATATCTTGTTGTTGCATACCCGTGAGAACAAATATCACTGCAAAGTCTGTCATCTCGGCTTCTCTCATTCATACAACCGCCTCAGgCATATGAGGAGGGTCCATCCCAACCATAAAGATGAAAAGGCAGGGAAAAAGGAATCAAAGCGTTATGAGTCGTGGACGTGTTCCCACTGCGAGCTGACGTTCAACAGCGCGTCCATCCTGAACCTGCACACGCTGGTGCACGCCGCCGACAACGTGGAGGAGAACTGCGCTGCGAGCGATCGCGACCGTGACTGTGACGGCGACGCCACGCGCGACGACTCCTTCACCCGCCTCCGGCCACAGGACCTGTGGAGCTGCCCACAGTGCTCGCAGaaattcaCCAATAAACGGAGACTCGCCACTCACGTTGCTGAACATGGGAAGAACAAACATCCGAATGATCAAAAACTCCATTGCGAGATATGTGGCCGGAACTTTGTTTCATCTGTTCGTTATCAGATCCACCGAGAGCTGCACGGGGAGGACACCAAGAAGCCGCTGCAGTGCAACGTCTGCTTCCGCCGGTTCATGACGCGGTCTGCCCTCACCTGTCACCTCAAGATACACAACAGCACAATTCAGTGGGAGTGTCCAATATGCAAAGATGCCTTCAGTAATGTTCTGGCACTGAAAACTCATGTCCACTCGCACGCTGTCAACGGGATCTACAGTTGCCCTCATTGTCAAAAGGGATTTGATGAGTACAGTGCAGTTCGCAAGCACATTCGAGCATTTCACTCTGCTCGAAAACATATCTGTGTGGACTGTGGGAAACGCTTTCCAACCCAAGACAAGCTTCGCATGCATTTGCTCAGACACTCGGATCACCGGGAATTTTTGTGCGCCGACTGCGGCAAACAGTTCAAGCGCAAAGACAAACTGAAGGAACACATGAAACGCATGCACTCTGTAGAGAAGGACACGGAACCAAGGCCAGTGGAAAAGCGACCGGAGAAGAAAGTGCTCTCGAAAATCGTGGTGAATCCGTCGGACTACGAACGCTACATCTACAAGTGCCACTCGTGCATGTTGGGCTTCAAGCGGCGCGGGATGTTGGTGAACCACTTAGCTAACCGACACCCGGACATCACACCAGACTCCGTGCCCGAGCTCAACCTGCCCATCCTCAAGACTACACGCGACTACTACTGCCAGTACTGTGATAAGATATATAAAAGCAGCTCAAAAAGAAAAGCTCACATATTGAAAAACCATCCTGGCTTAGAACTACCAATGAGTAATCGGCAAAAGGGCGGTGTGCCGGAGATACCAGGGCTGCCAAACCCGACGTTCTCGCAAACGGTCGGCAGCATTACCACGACGCCCCACAGCTGCCAGTGGTGCCACAAGCAGTACGCCAGCAAGGCTAAGCTGCTGCAACACCAGCGCAAGAAACATGTCAACATGCTGCCTCAGACTGAACAGGCGCCTCGAGCTCTCAAAAACCTGTCACCTGAAGACAACATCGTCGTCGAAAAGAACAACACTTCGAATGCTGTCGAGAAGAGTTTCGGCAACTCTGTGGAGAATCACAGTTACGGAATGAACGTTGAGAAGACAAACGTCGGCAAGATGGAGATCAAGACGGTTCACAAGATGGTGAACGATTACGAAGAGGATCAGGATGAAGAACCAGTCCCGATCGCTCTGAGCACCAACATGAGCAATATACCCATCCCCGGCATGAACCAGTTTCAAGAATATGAGATAATCGCAGCTGATGATGATGCTGGAGCCAACGGAATCCTTATTGATACTGCTACAATCATCAAACACAGAGCATCATACAAGAACGACAACATATCATCGGACCTGCTCTCGCAGGCCATGTCGGAGATCGGAGTGTCGCTGTCGGACCTTCGCGCGCTGTCGTCGGAGCAATACATCAAACTGCTGCAGAGCCCCGACACCCTCTACACGCCCTACCCCCGCTGA
- Protein Sequence
- MTLPLEKIPREYLVSARPQNGDVTTEDPGQTSLQDENEQDENGHLRTLYNTLKEQGLIIELRLQDQNQQLIDQSLSLPELQNFSEQQSSFPQPLAESAPEPAVELQPLEPVERRFWCEECNVLMDADCAEHQVNRKISDKAVPSRARATLPASYLAINRVPDTDKEEYGVFARKTIPKRTQFGPIEGVLFKSEEEVVVAAEPRLELTIETENGDFRVLDVSNEHMSNWMRFVRCATNERPPNLLLSQLGNSLYFTTTQMIHQREELLVWYSPSYAVRRNLPADPPQIEWPCSTCGKKLKTAEELTKHSNCHKPVVKLKYECAICNKRFPRGYSLKRHILLLHTRENKYHCKVCHLGFSHSYNRLRHMRRVHPNHKDEKAGKKESKRYESWTCSHCELTFNSASILNLHTLVHAADNVEENCAASDRDRDCDGDATRDDSFTRLRPQDLWSCPQCSQKFTNKRRLATHVAEHGKNKHPNDQKLHCEICGRNFVSSVRYQIHRELHGEDTKKPLQCNVCFRRFMTRSALTCHLKIHNSTIQWECPICKDAFSNVLALKTHVHSHAVNGIYSCPHCQKGFDEYSAVRKHIRAFHSARKHICVDCGKRFPTQDKLRMHLLRHSDHREFLCADCGKQFKRKDKLKEHMKRMHSVEKDTEPRPVEKRPEKKVLSKIVVNPSDYERYIYKCHSCMLGFKRRGMLVNHLANRHPDITPDSVPELNLPILKTTRDYYCQYCDKIYKSSSKRKAHILKNHPGLELPMSNRQKGGVPEIPGLPNPTFSQTVGSITTTPHSCQWCHKQYASKAKLLQHQRKKHVNMLPQTEQAPRALKNLSPEDNIVVEKNNTSNAVEKSFGNSVENHSYGMNVEKTNVGKMEIKTVHKMVNDYEEDQDEEPVPIALSTNMSNIPIPGMNQFQEYEIIAADDDAGANGILIDTATIIKHRASYKNDNISSDLLSQAMSEIGVSLSDLRALSSEQYIKLLQSPDTLYTPYPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -