Fatl068596.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- -
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000018.1:12860711-12879467[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.9 2.5e+02 4.7 0.5 3 23 3 24 1 24 0.91 2 21 0.91 1.2e+02 5.7 0.0 1 23 32 55 32 55 0.96 3 21 0.014 1.9 11.4 1.0 3 23 66 87 65 87 0.95 4 21 2.3 3e+02 4.5 0.1 2 20 126 144 125 148 0.85 5 21 0.16 21 8.1 6.8 1 21 190 210 190 211 0.94 6 21 0.099 13 8.8 0.4 3 23 219 239 217 239 0.90 7 21 0.091 12 8.9 0.3 2 23 247 269 246 269 0.94 8 21 2.8e-05 0.0036 19.9 0.3 2 23 276 297 275 297 0.97 9 21 0.00076 0.098 15.4 1.0 1 23 303 325 303 325 0.93 10 21 9.9e-05 0.013 18.2 2.4 1 23 331 353 331 353 0.99 11 21 0.89 1.1e+02 5.8 0.4 1 23 365 387 365 387 0.93 12 21 0.018 2.4 11.1 4.1 1 23 404 427 404 427 0.97 13 21 0.019 2.4 11.0 0.6 1 23 436 458 436 458 0.97 14 21 0.027 3.4 10.6 1.3 1 23 572 595 572 595 0.96 15 21 0.0064 0.83 12.5 5.4 1 23 614 637 614 637 0.97 16 21 0.00099 0.13 15.1 0.1 1 23 649 671 649 671 0.92 17 21 3.7e-06 0.00048 22.7 5.4 1 23 677 699 677 699 0.98 18 21 0.0002 0.026 17.3 1.6 1 23 705 727 705 727 0.98 19 21 0.0085 1.1 12.1 0.6 1 23 733 755 733 755 0.96 20 21 9.4e-06 0.0012 21.4 1.5 1 23 761 783 761 783 0.98 21 21 4e-05 0.0052 19.4 1.8 1 23 789 812 789 812 0.97
Sequence Information
- Coding Sequence
- atggaCTGTTTCATTTGCCATTTTAAATTTAACGACTATGAAGAGGCACTATCGCACGCACTGAGTGCCCACTGTGACAGTGTCAACGAGACCTTCCCTTGTCCTCTCTGCCAGAGCATTGCCAACACTGAGCAGGAGCTGCGAGATCACGTAGAAACCCAACATAACGACAAGAAAGACATGTATTTGATGCTCTGTAAGTTATGTGGATTGGAATTTGGACAAGTCGACCATCTTCATAAACATATCATCCAGGCACACAACACTTTTTCAAATCTGCGCTGTCCCCTCTGCGACTTCAAAGGCTTCCCCATGGAGAGTGTGTTGGTCCATGTTTTCCAAGAACATCAAGACACATCTGAACCTGACCTTACTACATGCCCAGTTTGCACATTAGTGTTTCAGTCGGAGCCGCAGGCGAAGCAACACTTTGCCGATGCTCACATTGTGGGCGGCGGCGCGAGGTGCTGCCCCGCGTGCAATACCGAGGTCGGCTCAGAGGACGAATATTTGAACCACTTCGTGGAAGATCACTGCTCTCTGTCTATCTACAAACTGCCTCTGACTTACAGTTGCTGTATCTGCAGCAACAACTTCCGATCTCAGTATCACCTCATCAAGCACACTTGCAATGTCGTGGCGGAGGAGTTGTTCTGCAGTGATTGCGACAAAGGGTTCCCGACGAAGGCCAGGTTCGTGTTCCATCTGCAGATCCACCAGTCGGCCGGGCAGACGATGCGGTGCGACGAGTGTCTGGCGGTGTTCACCAACGAGGACACGTTCTACGATCATGTCAGATTCCAGCATGAGCCGGACGAGCAGGTGACGTGCGAGCTGTGCCAGAAGGTGTTCAAGAACGTCGGCAGCCTCGCGATGCACATGCGGCGACACCAGCCCAACCGCGACCACGAGTGCGAGGAGTGCGGGAAGAGGTTCCAGAACGCGCAGACACTCCGCGAGCACTCGGTGAGTCACATGTCGGTGAAGCCGTTCCAGTGCCACATATGCGGCCAGTACCTGTCGCGGCTGTCTCGGCTCAGGATACACCTGCGCACTCACAGCGTCAAGGCCAGCAAAGCCTCCATGAAGGCCTACAAGTGCTCTGTTTGCACCCAGTTGTTTCCAAACACTAAAGCTGCAGTAAAGCATTCTGAAAGTCACACTGATGTGAACAAAATAAACCTTGAAGAACTTGAAGTTAATCTGGTGTTTCGCTGTGAATTCTGCGACGCATGTTTCCAGCAGACGACTGAACTGAACCTCCACCGCAAGAAGAACCATAGCAATCCGTCAGCTCAGAACGCATTCACTTGCAGCGTGTGTGGAGCCCAATTCTCTACCTACGCTCGAGTGACCACGCACAAACTGTCACATGGCATCAACACTGAGACTCTCATAGTGCCTGATGAAGGTGCCAACACTAACAACAAATGTGACATTGCAGTGGACACAGGAGAGGAGACGTTTGTGATCCCGCAGTACTTCCCGTGTCACGAGTGTGACAAACGCTGCCTGCACTACACCTACATGAGCTTCCACCGCAGTACTTCCTGTTCCAACACTAACAACAAATGTGATATTGCAGTGGACACAGGAGAGGAGACGTTTGTGATCCCGCAGTACTTCCTGTGTCACGAGTGTGATAAACGCTGCCTGCACTACACGTACATGAGCCTTCACCGCAGGTTCCAACATGCCAGTGGCAAGCCTATTTATACCTGCACCATCTGCGGGGATAAGTTTGCCACCTCATGGTCCCTGCAGTTCCATAGAAAGAAGCAGCACAACCTGGTAGAGCTGAAGGACATGGGCTGCGAAGGCGAAGGCGTGAACAACCTGTACCACTGCCGGGTGTGCGACAAGCCGTATGTGACGGAGACCAGCCTGGAGCATCACGTGCGCAAGTGTCACGAGACGGAGGACGGCGACGACCCCGCCTCCAGCTACATCTGCGAGACCTGCGGGAAGACATTCCAGTTCAAGAGTGCCCTGGACGCGCACGCCGACGCCCACCGAGGCATGAAGCGGTTCAAGTGCAGCCACTGCGACAAGCGGTTCACGCACCGCGCGGGGCTGATTCGACACATGAAGTTGCACTCGGAGACGGACACGTTCGAGTGCGAGTTCTGCGGCAAGAAGTTCCGCGACCGCACGGAGCGCGAGAACCACCGGCGCGCGCACACGGGCGAGCGGCCGTACATGTGCGACGTGTGCGGCCGGACGTTCCACACGCGGGCCGTGTGGCTCGACCACTCCAGGATACACCAGGACATAAGGCCATATCAGTGCGACCTCTGCAACCAGACATTCCGGCGCTCCTACGCGCTCAAGAGCCACTACCTCATACACACCGGAGAGCGGCCGTTCTCGTGCGAAATATGCGGCAAAACCTTCCGTCTCAAGCAAACGCTGTTTGCACACAAGAAGAAGGAACACCAAAGCACCGACGACTCGGGGCAAATCATTCTGCCCGACGAGGTTCTGTTGATCGAAGAAGACTCGAGGTACGTCGACGAGCTGCCGGGAGTCGAGGACTGCGACAGTCTGATGGGGAAGAACTACATGGACAGCGAACTGGTCGACAACCCGGCGCCCGCCACGTCCGTGGTGAAAAGCGAGTGGCGAATCGACCCGAAGCAACTGTTGAACAGAGTGGCCGAGGGGAGTGTGAAGGGGATGAAAAGCGGCCAGTTTCAGCACCAGAAGTACAGTTTGTTGTTGAAGTCCCAACAAATCGATGACGACTTGAGTTGA
- Protein Sequence
- MDCFICHFKFNDYEEALSHALSAHCDSVNETFPCPLCQSIANTEQELRDHVETQHNDKKDMYLMLCKLCGLEFGQVDHLHKHIIQAHNTFSNLRCPLCDFKGFPMESVLVHVFQEHQDTSEPDLTTCPVCTLVFQSEPQAKQHFADAHIVGGGARCCPACNTEVGSEDEYLNHFVEDHCSLSIYKLPLTYSCCICSNNFRSQYHLIKHTCNVVAEELFCSDCDKGFPTKARFVFHLQIHQSAGQTMRCDECLAVFTNEDTFYDHVRFQHEPDEQVTCELCQKVFKNVGSLAMHMRRHQPNRDHECEECGKRFQNAQTLREHSVSHMSVKPFQCHICGQYLSRLSRLRIHLRTHSVKASKASMKAYKCSVCTQLFPNTKAAVKHSESHTDVNKINLEELEVNLVFRCEFCDACFQQTTELNLHRKKNHSNPSAQNAFTCSVCGAQFSTYARVTTHKLSHGINTETLIVPDEGANTNNKCDIAVDTGEETFVIPQYFPCHECDKRCLHYTYMSFHRSTSCSNTNNKCDIAVDTGEETFVIPQYFLCHECDKRCLHYTYMSLHRRFQHASGKPIYTCTICGDKFATSWSLQFHRKKQHNLVELKDMGCEGEGVNNLYHCRVCDKPYVTETSLEHHVRKCHETEDGDDPASSYICETCGKTFQFKSALDAHADAHRGMKRFKCSHCDKRFTHRAGLIRHMKLHSETDTFECEFCGKKFRDRTERENHRRAHTGERPYMCDVCGRTFHTRAVWLDHSRIHQDIRPYQCDLCNQTFRRSYALKSHYLIHTGERPFSCEICGKTFRLKQTLFAHKKKEHQSTDDSGQIILPDEVLLIEEDSRYVDELPGVEDCDSLMGKNYMDSELVDNPAPATSVVKSEWRIDPKQLLNRVAEGSVKGMKSGQFQHQKYSLLLKSQQIDDDLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -