Fatl024675.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- -
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000003.1:39324305-39333418[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0013 0.16 14.7 0.1 2 21 178 197 177 198 0.94 2 10 7.9e-05 0.01 18.5 0.2 2 23 203 224 202 224 0.96 3 10 2.7e-06 0.00035 23.1 4.4 1 23 231 253 231 253 0.97 4 10 0.00094 0.12 15.1 4.1 1 23 259 281 259 281 0.97 5 10 2.8e-06 0.00036 23.1 0.3 2 23 290 311 290 311 0.98 6 10 2.1e-05 0.0026 20.4 0.2 3 23 319 339 317 339 0.97 7 10 1e-06 0.00013 24.5 4.9 1 23 345 367 345 367 0.97 8 10 1.9e-06 0.00024 23.6 0.4 1 23 373 395 373 395 0.98 9 10 7.7e-06 0.00099 21.7 8.2 1 23 401 423 401 423 0.98 10 10 0.00013 0.017 17.8 1.3 1 21 429 449 429 450 0.93
Sequence Information
- Coding Sequence
- ATGCTGCTTGGCGACTTGGCATCTGACCTAGCCATATCCGACTGTGGAAGCTGGTTTCCCAGTCCGCGGAAATGTGAAGTGTTATGCGTTGACGAGATATTCAAATCTGAAACCAACGGCGTTCTCCCGGGATCCCCTCGGCTCCTGGACACTCCCTCCCGCAGCGACGGTGACTCCTCCTCAGAACCTCCCAGAGAGCGGGAAAACGACGAGAACCAGCCAGTCAAGGAGCGGAGGCTCCAAGAGTTCTACCGGGATCCGGCCCAAAAAGACCCTGAAATCCCCTTCAAACCTCCCCTCCTCCTTGACCGACTCCAGAGATACAGCGAACGTCCCTTCTTCCCCGACCACCTATCCAGGATACTCAGCCCTAGCGAGATCAACCCACTGCACGGTCTAAAAACTCTCGCGAGTCTTCTAGAAGATTCCAACTCGAGTTCTTCGAGCATACAAAGGCGGAAGTCCCTGTCTTGCTCGGACCTGACCGAGGACGGGAGGAACGACTCCAACAACAACCCCGAGAGCGAGGTGAGGTGCGAGGAGTGTGGCAAGGTGTTCGAGAGCGATCAGCAGCTTCTGCAGCACAGGCAGGGTCAGCAGTGCCTCAGCTGCGAGGTCTGTGGCAAGACGTTCGACCAGCGCACTCTGTGGGCGGCGCACCAGAAACTGCACGAGGAGAGCAAGCAGGAGCACGCGTGCACCCACTGCAATAAGACGTTTGTCACACGGGCTTCCCTCAAGGTGCACCTGCGCACGCACACGGGCGAGAAGCCGTTCCACTGCCTGGAGTGCGGCAAGCAGTTCAGTCAGCTGCGCAACTACAAGTACCACCGCAGCGTCCACGAGGGCACGCGCGAGTTCGCCGCCACCTGCCCCGAGTGCGGCAAGTACTTCAACGACCGCGGCTACCTCAGCAGCCACATGAAGATCCACCGGAACCGGAAGGAGTACGGCTGCGAATACTGCGGCAAGAGCTTCAACCAGCGAGTCGCCTACAACATGCACGTCCGCATCCACACGGGCGAGAAGCCGCACGTCTGCCAACATTGCGGCAAGTCCTTCTCTCGCAAGATGTTGCTCAAGCAGCACCTGCGCATCCACACGGGCGAGAAGCCGTTCACCTGCGTCGTCTGCAACAAGGCGTTCGCGGACCGCAGCAACATGACGCTGCACATGCGGCTGCACTCGGGGGTCAAGCCGTACACGTGCAGCGTCTGCAACAAGTCCTTCACCAAGAAGCACCACCTCAAGACGCACATGAACTACCACACGGGCGTCAAGCCGTACGCCTGCAGCAAGTGCGGGCTGCGGTTCAGCCAGAGCAGCAACATGCGGACGCACTTCAAGAAGTGTTCCTCCACGGCGTTTCAGCAGCCGCAGCCTCCGGTGAGCGGGAACGGTCCTATCAACATGAGCGTCAACCCTGCGGCGCCTCGGGTTGAGGATGTGAATGTGAGTAGTTTTGTACAGGAGAAGGCGTAG
- Protein Sequence
- MLLGDLASDLAISDCGSWFPSPRKCEVLCVDEIFKSETNGVLPGSPRLLDTPSRSDGDSSSEPPRERENDENQPVKERRLQEFYRDPAQKDPEIPFKPPLLLDRLQRYSERPFFPDHLSRILSPSEINPLHGLKTLASLLEDSNSSSSSIQRRKSLSCSDLTEDGRNDSNNNPESEVRCEECGKVFESDQQLLQHRQGQQCLSCEVCGKTFDQRTLWAAHQKLHEESKQEHACTHCNKTFVTRASLKVHLRTHTGEKPFHCLECGKQFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYGCEYCGKSFNQRVAYNMHVRIHTGEKPHVCQHCGKSFSRKMLLKQHLRIHTGEKPFTCVVCNKAFADRSNMTLHMRLHSGVKPYTCSVCNKSFTKKHHLKTHMNYHTGVKPYACSKCGLRFSQSSNMRTHFKKCSSTAFQQPQPPVSGNGPINMSVNPAAPRVEDVNVSSFVQEKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00052135;
- 90% Identity
- -
- 80% Identity
- -