Fatl070464.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- -
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000019.1:15281312-15291245[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 3.2e-06 0.00041 22.9 0.2 2 23 26 48 25 48 0.95 2 23 0.00022 0.028 17.1 3.3 3 23 133 153 131 153 0.97 3 23 0.00064 0.082 15.7 0.2 1 23 159 181 159 181 0.98 4 23 0.00033 0.043 16.6 1.2 1 23 187 210 187 210 0.96 5 23 0.0062 0.8 12.6 1.0 1 23 276 299 276 299 0.95 6 23 0.0062 0.8 12.6 1.0 1 23 325 348 325 348 0.95 7 23 0.00033 0.043 16.6 1.2 1 23 374 397 374 397 0.96 8 23 0.0062 0.8 12.6 1.0 1 23 463 486 463 486 0.95 9 23 0.0062 0.8 12.6 1.0 1 23 512 535 512 535 0.95 10 23 0.00033 0.043 16.6 1.2 1 23 561 584 561 584 0.96 11 23 0.0089 1.1 12.1 0.7 1 23 649 672 649 672 0.96 12 23 0.0033 0.43 13.4 0.7 2 23 712 734 711 734 0.94 13 23 0.00033 0.043 16.6 1.2 1 23 760 783 760 783 0.96 14 23 0.0019 0.25 14.2 0.6 2 23 797 819 796 819 0.94 15 23 0.00015 0.02 17.6 1.0 1 23 845 868 845 868 0.97 16 23 0.00033 0.043 16.6 1.2 1 23 880 903 880 903 0.96 17 23 0.00081 0.1 15.3 0.8 2 23 917 939 916 939 0.94 18 23 0.00011 0.014 18.1 1.3 1 23 965 988 965 988 0.97 19 23 0.0019 0.25 14.2 0.6 2 23 1042 1064 1041 1064 0.94 20 23 0.00033 0.043 16.6 1.2 1 23 1131 1154 1131 1154 0.96 21 23 5.5e-07 7e-05 25.3 0.7 1 23 1160 1182 1160 1182 0.99 22 23 1.5e-05 0.0019 20.8 2.5 1 23 1188 1210 1188 1210 0.99 23 23 6.7e-05 0.0087 18.7 1.5 1 23 1216 1238 1216 1238 0.97
Sequence Information
- Coding Sequence
- ATGCACAACACGAGTGACCTTTGCCTCTGCCTCTGTCAGACGGGGCTGAAGGAGGAGGGGGCGAGCGCAGGGCTGCCGTGCAGTGTGTGCGGCAAGGTGTTCCGCCGACAGAAGGCGCTGGAGAGCCACATGAGCGTGTCACACCCGCGCGACCACGAGATCGAGGAGTTCAGCGAGCCCGAGGACATGATGGAGGGCCTCCGACACGTGGTCAACATCGGCAGCGGCGACGAGGAGCAGGTCGACGACAAGATCAGCCGGCAGTGGAGGTACAGCGAGCTGGGCATGGACCTGCAGGACATGTGCCTGGTGTCGCCCGGCGGCGGGGGCGGGGAGGGGGGTGGGAGCAGCAGCGGGGGCAGCAAGGCCGCGTCGCCCCGCACCAAGACGCTGGCATGTCCGCACTGCGACCGCAGCTTCAACCACCGCAACTCGCTGCTGTACCACGTGCGGAGCCACAGTGGCCAGCGGCCCCACCAGTGCGACGTCTGCGGCAAGGGCTTCCTGGCCGCCAGCGCGCTCAAGGTCCACATGAGGCTGCACAGCGGGGACAAGCCGTACAAGTGTGAGTTCTGCAACAAGCTGTTCCGCCAGTGGGGGGACCTCAAGTACCACGTCACCTCGCTCCACTCTGACACCAAGCAGTTCCAGTCAACTTGTGTTTGTGTCCCAGGTCCACATGAGGCTGCACAGCGGGGACAAGCCGTACAAGTTGGGGGGACCTCAAGTACCACATCACCTCGCTCCACTCCGACACCGAGCAGCTCCAGTCAACATGTGTTTGTGTCCCAGGTTCACATGAGGCTGCACAGCGGGGACAAGCTGTACAAGTGTGAGTTCTGCAACAAGCTGTTCCGCCAGTGGGGGGACATCAAGTACCACGTCACCTCGCTCCACTCCGACACCAGCAGCTCCAGTCAACATGTGTTTGTGTCCCAGGTTCACATGAGGCTGCACAGCGGGGACAAGCTGTACAAGTGTGAGTTCTGCAACAAGCTGTTCCGCCAGTGGGGGGACATCAAGTACCACGTCACCTCGCTCCACTCCGACACCAGCAGCTCCAGTCAACATGTGTTTGTGTCCCAGGTCCACATGAGGCTGCACAGCGGGGACAAGCCGTACAAGTGTGAGTTCTGCAACAAGCTGTTCCGCCAGTGGGGGGACCTCAAGTACCACGTCACCTCGCTCCACTCTGACACCAAGCAGTTCCAGTCAACTTGTGTTTGTGTCCCAGGTCCACATGAGGCTGCACAGCGGGGACAAGCCGTACAAGTTGGGGGGACCTCAAGTACCACATCACCTCGCTCCACTCCGACACCGAGCAGCTCCAGTCAACATGTGTTTGTGTCCCAGGTTCACATGAGGCTGCACAGCGGGGACAAGCTGTACAAGTGTGAGTTCTGCAACAAGCTGTTCCGCCAGTGGGGGGACATCAAGTACCACGTCACCTCGCTCCACTCCGACACCAGCAGCTCCAGTCAACATGTGTTTGTGTCCCAGGTTCACATGAGGCTGCACAGCGGGGACAAGCTGTACAAGTGTGAGTTCTGCAACAAGCTGTTCCGCCAGTGGGGGGACATCAAGTACCACGTCACCTCGCTCCACTCCGACACCAGCAGCTCCAGTCAACATGTGTTTGTGTCCCAGGTTCACATGAGGCTGCACAGCGGGGACAAGCCGTACAAGTGTGAGTTCTGCAACAAGCTGTTCCGCCAGTGGGGGGACCTCAAGTACCACGTCACCTCGCTCCACTCCGACACCAGCAGTTCCAGACAACATGTGTTTGTGTCCCAGGTTCACATGAGGCTGCACAGCGGGGACAAGCCGTACAAGTTGGGGGACCTCAAGTACCACGTCACCTCGCTCCACTCCGACACCAGCAGTTCCAGTCAACTTGTGTTTGTGTCCCAGCTTCACATGAGGCTGCACAGCGGGGACAAGCCGTACAAGTGTGAGTTCTGCAACAAGCTGCTCCGCCAGTGGGGGGACCTCAAGTACCACGTCACCTCGCTCCACTCCGACACCGAGCAGCTCCAGTCAACATGTGTTTGTGTCCCAGTGGGGGACCTCAAGTACCACGTCACCTCGCTCCACTCCGACACCAGCAGCTCCAGTCAACATGTGTTTGTGTCCCAGTGTGAGTTCTGCAACAAGCTGTTCCGCCAGTGGGTGGACCTCAAGTACCACGTCACCTCGCTCCACTCCGACACCAGCAGTTCCAGTCAACTTGTGTTTGTGTCCCAGCTTCACATGAGGCTGCACAGCGGGGACAAGCCGTACAAGTGTGAGTTCTGCAACAAGCTGTTCCGCCAGTGGGGGGACCTCAAGTACCACGTCACCTCGCTCCACTCCGACACCAGCAGTTCCAGTCAACTTGTGTTTGTGTCCCAGTGTGAGTTCTGCAACAAGCTCTTCCGCCAGTGGGGGGACCTCAAGTACCACGTCACCTCGCTCCACTCCGACACCAGCAGTTCCAGTCAACTTGTGTTTGTGTCCCAGGTCCACATGAGGCTGCACAGCGGGGACAAGCCGTACACGTGTGAGTTCTGCAACAAGCTGTTCCGCCAGTGGGGGGACCTCAAGTACCACATCACCTCGCTCCACTCCGACACCAAGCAGCTCCACGGGGACAAGCTGTACAAGTGTGAGTTCTGCAACAAGCTGTTCCGCCAGTGGGGGGACCTCAAGTACCACGTCACCTCGCTCCACTCCGACACCAGCAGTTCCAGTCAACTTGTGTTTATGTCCCAGTGTGAGTTCTGCAACAAGCTCTTCCGCCAGTGGGGGAACCTCAAGTACCACGTCACCTCGCTCCACTCCGACACCAGCAGTTCCAGTCAACTTGTGTTTGTGTCCCAGGTCCACATGAGGCTGCACAGCGGGGACAAGCCGTACAAGTGTGAGTTCTGCAACAAGCTGTTCCGCCAGTGGGAGGACCTCAAGTACCACATCACCTCGCTCCACTCTGACACCAAGCAGCTCCAGTCAAAATGTGTTTGTGTCCCAGCTTCACATGAGGCTGCACAGCGGGGACAAGCCGTACAAGTTGGGGGGGACCTCAAGTACCACGTCACCTCGCTCCACTCCGACACCAGCAGTTCCAGTCAACTTGTGTTTGTGTCCCAGTGTGAGTTCTGCAACAAGCTCTTCCGCCAGTGGGGGGACCTCAAGTACCACGTCACCTCGCTCCACTCCGACACCAGCAGTTCCAGTCAACTTGTGTTTGTGTCCCAGGTCCACATGAGGCTGCACAGCGGGGACAAGCCGTACAAGTGTGAGTTCTGCAACAAGCTTACCACATCACCTCGCTCCACTCCGACACCAAGCAGCTCCAACCAACATGTGTTTGTGTCCCAGGTCCACATGAGGCTGCACAGCGGGGACAAGCCGTACAAGTGTGAGTTCTGCAACAAGCTGTTCCGCCAGTGGGGGGACCTCAAGTACCACGTCACCTCGCTCCACTCCGACACCAAGCAGTTCCAGTGCGAGTACTGCGGCAAGGACTTCGCCAGGAAATACTCTCTTATTGTGCACAGGCGGATTCACACTGGAGAGAAGAACTACACATgtgaattttgtaataaaacattCAGGGCCAGCTCCTACCTGCAAAACCATAGGCGGATACACACAGGAGAAAAACCCCATTCTTGTGACGTGTGCGGGAAGCCGTTCCGGGTGAGGTCAGATATGAAACGACATCGCGGCACTCACTCAGGAGAGAAGAAGCCTCGGGAACGAAACAACCACAGCACTCCTTCCACTCAGCGGCTGATCGACGAGCACCTGCAGCAGGAGATGTCGGACGTGGAGGCAGAGACGATCCTCCCCGACTGCAGCCCGCTGAACCTCAACGTGCGGAGCAACGACTCGGACGATACCCTGCGGCTAATCGACGAGCACCTGCAGCAGGAGATGTCGGACGTGGAGGCAGAGACGATCCTCCCCGACTGCAGCCCGCTGAACCTCAACGTGCGGAGCAACGACTCGGACGATACCCTGCGGCTAATCGACGAGCACCTGCAGCAGGAGATGTCGGACGTGGAGGCGGAGACGATCCTCCCCGACTGCAGCCCGCTGAACCTCAACGTGCGGAGCAACGACTCGGACGATACCCTGCGGCTGTTAGACGAGCACCTGCGTCAGGAGATGTCGGACGTAGAGGCGGAGTCGATCCTCCCTGACTGCAGCCCGCTGAACCTCAACGTGCGGAGCAACGACTCGGACGACACCCTGGTCTACCGCGACTGCATGGAGCGTGAGACCGTGTTTCTGTGGATACCCAACACCCAGCCCACGATACTGTCCGACGAATAG
- Protein Sequence
- MHNTSDLCLCLCQTGLKEEGASAGLPCSVCGKVFRRQKALESHMSVSHPRDHEIEEFSEPEDMMEGLRHVVNIGSGDEEQVDDKISRQWRYSELGMDLQDMCLVSPGGGGGEGGGSSSGGSKAASPRTKTLACPHCDRSFNHRNSLLYHVRSHSGQRPHQCDVCGKGFLAASALKVHMRLHSGDKPYKCEFCNKLFRQWGDLKYHVTSLHSDTKQFQSTCVCVPGPHEAAQRGQAVQVGGTSSTTSPRSTPTPSSSSQHVFVSQVHMRLHSGDKLYKCEFCNKLFRQWGDIKYHVTSLHSDTSSSSQHVFVSQVHMRLHSGDKLYKCEFCNKLFRQWGDIKYHVTSLHSDTSSSSQHVFVSQVHMRLHSGDKPYKCEFCNKLFRQWGDLKYHVTSLHSDTKQFQSTCVCVPGPHEAAQRGQAVQVGGTSSTTSPRSTPTPSSSSQHVFVSQVHMRLHSGDKLYKCEFCNKLFRQWGDIKYHVTSLHSDTSSSSQHVFVSQVHMRLHSGDKLYKCEFCNKLFRQWGDIKYHVTSLHSDTSSSSQHVFVSQVHMRLHSGDKPYKCEFCNKLFRQWGDLKYHVTSLHSDTSSSRQHVFVSQVHMRLHSGDKPYKLGDLKYHVTSLHSDTSSSSQLVFVSQLHMRLHSGDKPYKCEFCNKLLRQWGDLKYHVTSLHSDTEQLQSTCVCVPVGDLKYHVTSLHSDTSSSSQHVFVSQCEFCNKLFRQWVDLKYHVTSLHSDTSSSSQLVFVSQLHMRLHSGDKPYKCEFCNKLFRQWGDLKYHVTSLHSDTSSSSQLVFVSQCEFCNKLFRQWGDLKYHVTSLHSDTSSSSQLVFVSQVHMRLHSGDKPYTCEFCNKLFRQWGDLKYHITSLHSDTKQLHGDKLYKCEFCNKLFRQWGDLKYHVTSLHSDTSSSSQLVFMSQCEFCNKLFRQWGNLKYHVTSLHSDTSSSSQLVFVSQVHMRLHSGDKPYKCEFCNKLFRQWEDLKYHITSLHSDTKQLQSKCVCVPASHEAAQRGQAVQVGGDLKYHVTSLHSDTSSSSQLVFVSQCEFCNKLFRQWGDLKYHVTSLHSDTSSSSQLVFVSQVHMRLHSGDKPYKCEFCNKLTTSPRSTPTPSSSNQHVFVSQVHMRLHSGDKPYKCEFCNKLFRQWGDLKYHVTSLHSDTKQFQCEYCGKDFARKYSLIVHRRIHTGEKNYTCEFCNKTFRASSYLQNHRRIHTGEKPHSCDVCGKPFRVRSDMKRHRGTHSGEKKPRERNNHSTPSTQRLIDEHLQQEMSDVEAETILPDCSPLNLNVRSNDSDDTLRLIDEHLQQEMSDVEAETILPDCSPLNLNVRSNDSDDTLRLIDEHLQQEMSDVEAETILPDCSPLNLNVRSNDSDDTLRLLDEHLRQEMSDVEAESILPDCSPLNLNVRSNDSDDTLVYRDCMERETVFLWIPNTQPTILSDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -