Fatl060781.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Flexamia atlantica
Gene Symbol
ZNF438
Assembly
GCA_035578135.1
Location
JAQJVK010000013.1:16694398-16740798[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00026 0.034 16.9 2.5 1 23 316 338 316 338 0.98
2 18 0.00027 0.035 16.8 1.8 1 23 344 367 344 367 0.96
3 18 0.00024 0.031 17.0 0.6 2 23 375 396 374 396 0.97
4 18 0.00075 0.096 15.4 3.8 1 21 402 422 402 424 0.96
5 18 2.2e-05 0.0029 20.2 7.4 1 23 430 452 430 452 0.99
6 18 0.00025 0.032 17.0 2.0 2 23 459 480 459 480 0.96
7 18 6.1e-05 0.0078 18.9 5.0 1 23 486 508 486 508 0.98
8 18 7.2e-06 0.00092 21.8 2.6 1 23 514 536 514 536 0.98
9 18 0.00017 0.021 17.5 6.7 1 23 542 564 542 564 0.97
10 18 0.00012 0.015 18.0 6.9 1 23 570 592 570 592 0.97
11 18 1.3e-06 0.00017 24.1 2.8 1 23 598 620 598 620 0.98
12 18 4.7e-06 0.0006 22.4 7.9 1 23 626 648 626 648 0.98
13 18 4e-05 0.0051 19.5 7.5 1 23 654 676 654 676 0.98
14 18 0.0003 0.038 16.7 6.1 1 23 682 704 682 704 0.98
15 18 2.3e-05 0.0029 20.2 3.8 1 23 710 732 710 732 0.97
16 18 0.00029 0.037 16.7 0.2 1 23 738 760 738 760 0.97
17 18 0.021 2.7 10.9 5.4 1 23 769 791 769 791 0.98
18 18 4.3e-07 5.5e-05 25.7 0.4 1 23 796 818 796 818 0.98

Sequence Information

Coding Sequence
ATGAATCCCCCCGACCTCACTGCGGGCGTGGTCACGGCCACTGCCCTGCCCAGCGCCGAAGTCGTCGTACCGGTGTCGCAAGATGGCCGCACTGTCGCTACATCAGCCGCCGAGATGTGTCAGGGCACAACAGTGGCGCTCTCCAGTGTCGCTAAATACTGGGTCCTTACCAACCTGTTCCCCGGGCCCGTACCTCAGGTGTCGGTGTACGGGCTACAGTCACCGAGGGTGGACAAGGATGGGACGTGTCTGACGCCGGTGAACGTCGGAGTGGAGACCATGACTCTGATACAGCAGCACCAGGCGCAGACGATCCCGGTGTCTGCTGTATCGACTCTGACTTTGCCATCACCGCAGCTGGCGACTGTCGCCCTTCCATCTTCGTCGCCTCAGCTGCAAGATAAGTCAACTTGTATCACAGAACAATGTGGCAACAACCAGGTTCACTGCCAGGTGCAATGTGATCTGACCTTGGTCCAACAACCTACACTCGTGCCAACTTCACAGAGCATCACACTTACCCCGGAACAGCATCAGCAGTTGCAAcagcagGTCCTTCAACACCAGGCGTTAGCACAGACGCAGGATGGACAACAGATAGAGTTGGTGGTGCAGGAAGTGAAAGTGGAAGAGGAGAAGAACAAGGATGTCGCGATTATGAACAGCTACCATGGGGATAAGCAGCAACAGCCCAACATCCAGCAGATCCTGGTGGAAAAACCTCTTGGCGATAATATTGTCTATAAGCCGGTGAACGTAGACGATATCAATCAACTGCTTGCCTACCACGAGGTGTTTGGCAAACTGCAGGGTGGGGGCAACGCCGGGGGGGAGCAGCCGGTCCCACAGCAGCAAGTCCCGGTTTCTGTGACGGTCCCGGTTCCGGTCCCGGGTCCCGCCAAGTCCCCGGGGAGCGATGAGGCCCCCGGAAGTCCCCCGGGGACCCACCAGTGCGACCTGTGCAACAAGGTGTTCCCCTACCGTTACCAGATGATCGTGCACAGGAGATACCACACGGAGAGGAAACCGTTCCAGTGTCAGGTTTGTGGGCGATCGTTTGAAAACACGGAAGAACTGAGCCAGCACGGGAAAAGTTGCCATCAAGACAACAACTCCATGCTGACATGTCAGGTCTGTTTCCACGTGTTCGCCAGTGCCGGCAGCCTGGAACGTCATGTCAGGAGACACTGCCTCGATAAACCTTACCAATGTGGCATATGCAATAAGGGATTTGGCAGAAAGGAGCACCTGGATAACCACCAACGCTGCCACTCGGGCGAGACGCCGTACCGGTGCCAGTACTGCGAGAAATGTTTCAGTCGGAAAGAGCACATGGTCAACCACATCAGGAAACATACGGGTGACACGGCCAACCGTTGCGATATCTGTAAGAAAGCGTTCACGAGGCGGGAACACTTCCTCAACCACGTCCTATGGCACACAGGCGAGACGCCGCACACGTGTCAGCTCTGCGGGAAGAAGTACACTCGGAAGGAACACCTGGCGAACCACGAGCGGAGCCACACCAATGACACGCCCTTCCGCTGCGAGGTGTGCTCCAAGGCGTTCACGAGGAAGGAACATTTTACCAACCACATCATGTGGCACACGGGCGAAACACCGCACAGGTGTGACTTCTGCTCCAAGACGTTCACACGGAAGGAGCACCTGCTCAACCACGTGAGACAGCACACGGGCGAGTCTCCCCACCGCTGTAACTTCTGTACCAAGAGCTTCACGAGAAAGgaGCACTTAGTAAACCACGTTCGCCAGCACACAGGGGAAACTCCGTTCCAGTGCCAGTTTTGTCCGAAGGCGTTTACGAGGAAGGACCATCTCGTCAATCATATCAGACAGCACACAGGAGAGTCGCCGCACAAGTGCACATATTGTACCAAGAGTTTTACAAGAAAGGAGCATCTGACGAACCACATACGACAGCACACGGGAGAGTCGCCGCACAAATGTTCGTTCTGTTCCAAGTTTTTCACGAGAAAAGAACACCTCACCAACCATATAAGGATACACACAGGTGAGTCCCCCCACCGCTGCGAGTTCTGCAGCAAGACGTTCACGAGGAAGGAACACCTCGTGAGTCACTCCAGGGTGCACACAGGGGACACGGAACACAACTGTAACGTCTGTAGCAAACCTTTCGTCAAGAAGGAACACCTTATCAACCATATGCGCAGCCATACAGGGGAGCGTCCTTATGCCTGCGGGGAATGTGGGAAGTCGTTCCCGCTCAAAGGCAACCTTTTATTTCACCAAAGATCGCACAACAAAGGCTCGGCAGAACGACCGTTCAGATGTGACCAATGCCCCAAGGACTTCACCTGCAAAGGTCATTTAGTCAGCCATAAGAGGAGTCACGAAGGAACGCCGTTCATATGTGAACAGTGCGATAAGAGCTTTACTACAAAGGATAGCCTGATAGAACACATCAAGGTCCACGAAGAGATGCCATCAGACCCactgggggggggaggggaggttaCCCCCACCACCACCGCCCTCCCCCCTCCTGCGCTTCACCCGGTTGTCGTGCCAATGAGTAATGCAGTCCTCGCTACTTACTGA
Protein Sequence
MNPPDLTAGVVTATALPSAEVVVPVSQDGRTVATSAAEMCQGTTVALSSVAKYWVLTNLFPGPVPQVSVYGLQSPRVDKDGTCLTPVNVGVETMTLIQQHQAQTIPVSAVSTLTLPSPQLATVALPSSSPQLQDKSTCITEQCGNNQVHCQVQCDLTLVQQPTLVPTSQSITLTPEQHQQLQQQVLQHQALAQTQDGQQIELVVQEVKVEEEKNKDVAIMNSYHGDKQQQPNIQQILVEKPLGDNIVYKPVNVDDINQLLAYHEVFGKLQGGGNAGGEQPVPQQQVPVSVTVPVPVPGPAKSPGSDEAPGSPPGTHQCDLCNKVFPYRYQMIVHRRYHTERKPFQCQVCGRSFENTEELSQHGKSCHQDNNSMLTCQVCFHVFASAGSLERHVRRHCLDKPYQCGICNKGFGRKEHLDNHQRCHSGETPYRCQYCEKCFSRKEHMVNHIRKHTGDTANRCDICKKAFTRREHFLNHVLWHTGETPHTCQLCGKKYTRKEHLANHERSHTNDTPFRCEVCSKAFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCTKSFTRKEHLVNHVRQHTGETPFQCQFCPKAFTRKDHLVNHIRQHTGESPHKCTYCTKSFTRKEHLTNHIRQHTGESPHKCSFCSKFFTRKEHLTNHIRIHTGESPHRCEFCSKTFTRKEHLVSHSRVHTGDTEHNCNVCSKPFVKKEHLINHMRSHTGERPYACGECGKSFPLKGNLLFHQRSHNKGSAERPFRCDQCPKDFTCKGHLVSHKRSHEGTPFICEQCDKSFTTKDSLIEHIKVHEEMPSDPLGGGGEVTPTTTALPPPALHPVVVPMSNAVLATY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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