Basic Information

Insect: Flexamia atlantica
Gene Symbol: -
Assembly: GCA_035578135.1
Location: JAQJVK010000032.1:244479-257379[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 1.8e-05 0.0023 20.5 0.4 1 23 38 60 38 60 0.99

2 19 0.011 1.4 11.8 4.2 1 23 66 88 66 88 0.99

3 19 0.0014 0.18 14.6 2.0 1 23 94 116 94 116 0.98

4 19 1.6e-05 0.002 20.7 1.7 1 23 122 144 122 144 0.98

5 19 6.1e-07 7.9e-05 25.2 0.8 1 23 150 172 150 172 0.99

6 19 6.6e-06 0.00085 21.9 0.9 1 23 180 202 180 202 0.99

7 19 0.00011 0.014 18.1 1.2 3 23 210 230 209 230 0.99

8 19 0.0018 0.23 14.3 2.1 1 23 236 258 236 258 0.97

9 19 3.6e-06 0.00046 22.8 0.9 1 23 264 286 264 286 0.98

10 19 0.00016 0.021 17.5 2.9 1 23 290 312 290 312 0.98

11 19 0.00054 0.07 15.9 0.8 2 23 317 338 316 338 0.97

12 19 3.2e-05 0.0041 19.8 1.8 1 23 344 366 344 366 0.97

13 19 2.1e-06 0.00026 23.5 0.3 1 23 372 395 372 395 0.98

14 19 1e-05 0.0013 21.3 1.7 1 23 402 424 402 424 0.97

15 19 6.2e-05 0.0079 18.9 1.1 1 23 430 452 430 452 0.98

16 19 0.00014 0.018 17.7 0.5 1 23 458 480 458 480 0.96

17 19 3.8e-07 4.9e-05 25.8 2.1 1 23 486 508 486 508 0.98

18 19 3e-05 0.0038 19.9 0.4 1 23 514 536 514 536 0.98

19 19 1.3e-05 0.0016 21.0 1.2 1 23 542 564 542 564 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	1.8e-05	0.0023	20.5	0.4	1	23	38	60	38	60	0.99
2	19	0.011	1.4	11.8	4.2	1	23	66	88	66	88	0.99
3	19	0.0014	0.18	14.6	2.0	1	23	94	116	94	116	0.98
4	19	1.6e-05	0.002	20.7	1.7	1	23	122	144	122	144	0.98
5	19	6.1e-07	7.9e-05	25.2	0.8	1	23	150	172	150	172	0.99
6	19	6.6e-06	0.00085	21.9	0.9	1	23	180	202	180	202	0.99
7	19	0.00011	0.014	18.1	1.2	3	23	210	230	209	230	0.99
8	19	0.0018	0.23	14.3	2.1	1	23	236	258	236	258	0.97
9	19	3.6e-06	0.00046	22.8	0.9	1	23	264	286	264	286	0.98
10	19	0.00016	0.021	17.5	2.9	1	23	290	312	290	312	0.98
11	19	0.00054	0.07	15.9	0.8	2	23	317	338	316	338	0.97
12	19	3.2e-05	0.0041	19.8	1.8	1	23	344	366	344	366	0.97
13	19	2.1e-06	0.00026	23.5	0.3	1	23	372	395	372	395	0.98
14	19	1e-05	0.0013	21.3	1.7	1	23	402	424	402	424	0.97
15	19	6.2e-05	0.0079	18.9	1.1	1	23	430	452	430	452	0.98
16	19	0.00014	0.018	17.7	0.5	1	23	458	480	458	480	0.96
17	19	3.8e-07	4.9e-05	25.8	2.1	1	23	486	508	486	508	0.98
18	19	3e-05	0.0038	19.9	0.4	1	23	514	536	514	536	0.98
19	19	1.3e-05	0.0016	21.0	1.2	1	23	542	564	542	564	0.97

Sequence Information

Coding Sequence: ATGTTGTCTTGGGCGGAGGCCAAACCCCGACACTTCCGGTGTTCTGGCAACTCTTTGGTATCAGTCACCCAGTTAAAGTATCACACACTGATTCATTCCAAGGAGCGCAACTACAAATGCAGGGTTTGCGAGAGGTCTTTTGTGCTTCCAGGTACTCTGAGAACCCATATGTTGACTCATACCAAGGAGCGTCCGTACAAGTGTAGGCTGTGCGAGAAGTCTTTCGCTCATGTAACTACTCGTAAATATCACATGTTGACCCACTCTGGCGAAAGACCGCACCAGTGTCTGATATGTAAGACACACTTCGCTACACCCATGGGTCTGAGGAGTCACGTGTTGACACACACGGGGGAGAGGCCTTATAAATGTCTAGAATGTGACAGGTCGTTTTCCCAATCGCAATCGTTAAAATTGCATTCACGATTACATTCCGGGGAGAAACCCTACAAATGTGAAATGTGTAAGAAGGTATTCGCAAGGCGGGGAACATTGCAGAGTCATATTTTAACACATACGGGGGAACGGCAGCGCCCGTATAAGTGTGCGACTTGTGAGAAATCATTCGCCTTTCGATCAACTCTGCGGATCCACATCTTGACCCATAGTAATGAAAGAGCTCACGGGTGTACATTTTGTGAGAAGTCGTTTAAAAAAAGGGAAAGTTTAATTAAGCACGTCTTGACACACATTCAAGAACGTATCTACAAGTGTCGAAAGTGTGAGGAGTTCTTTAAAAGTCTAGTGGACTTCAGAAGACACGAGGTTACTCATGTTGGAGAGAGTCCTCATAAATGTGAAATATGCCAGAGGTCGTTTGCAGATATAGGCACCTTGAAACGTCATATGGCGACACACGATGGGGAACACAAGTGTGGAATTTGTGAAAAATCGTTTAGATTAGAAAAAAGTTTGAAGAATCACACATTGACACATAGAGAATACAAGAGGTGTTCAAGGTGTGGGGAGTCCTTCGAAAGTCTTGAAGATTTCAGAAGCCACCAGGTCACTCATGCTGGTGAACGCCCTCATAAATGTGAAATATGCCAGAAGTCATTTGCAAATCGAAAAACCTTGAAAGGTCATTTGGCAATGCACGCTGGAGAACTTCCTTACAAGTGTCCTCAGTGCGAGAAATCCTTCGGGACTTTGGGAAATTTAAAAGGCCATATGATGAGGATTCATGAGAACCGCCCGCGCACTCATGAGTGCGACATATGCCATAAGTCATTTGCTGAACGAGGTGAGTTGAAAAGTCATATGTCCGTGCATAGCACGGAGCGTCCGTATCAGTGTGCTGTATGCGAGAAGTCATTTGTTAGATTTATATCATTAGAACATCACATGGTTAGACATAACGGCGTGCGTCCTTATCAGTGTGAAATATGTCAGAAGTCCTTCGTTGATTTGCAGTCGGTGAAGAAGCACAAAGTGGTACACTCAGAGATGCGGGCCTTCAAGTGCCTCACTTGTGATAAGACGTTTACTCAAAAAGCATATTTGAAAGCACATATGCAATCACACTCGAAGGAGAAACCTTACGTTTGTCAGGAGTGTGGAATGGCATTCAGTCTGCAACACGCACTGAAGACACACCTCCTGATTCATAGTGGTGTGAGGCGATACAAGTGTGAAGTGTGCGAAAAGTCTTTCTTTCAGGCTGCTCACTTGAAGACTCACTTGCTGGCCCATGCCGtagCCGCTAACCCCCAGATGACGTCAAGACGACAGCTGgcccgacaatcagctgacgctGGAAGCGCTGTCGGCGGTCGCAAGGTCGCACTGGTCGCAGTTGCAGTGCAGTACCACAGTACCAGTCCAGTACCAGTACCACCAAGCCACCAAGCCATTGCCTGA
Protein Sequence: MLSWAEAKPRHFRCSGNSLVSVTQLKYHTLIHSKERNYKCRVCERSFVLPGTLRTHMLTHTKERPYKCRLCEKSFAHVTTRKYHMLTHSGERPHQCLICKTHFATPMGLRSHVLTHTGERPYKCLECDRSFSQSQSLKLHSRLHSGEKPYKCEMCKKVFARRGTLQSHILTHTGERQRPYKCATCEKSFAFRSTLRIHILTHSNERAHGCTFCEKSFKKRESLIKHVLTHIQERIYKCRKCEEFFKSLVDFRRHEVTHVGESPHKCEICQRSFADIGTLKRHMATHDGEHKCGICEKSFRLEKSLKNHTLTHREYKRCSRCGESFESLEDFRSHQVTHAGERPHKCEICQKSFANRKTLKGHLAMHAGELPYKCPQCEKSFGTLGNLKGHMMRIHENRPRTHECDICHKSFAERGELKSHMSVHSTERPYQCAVCEKSFVRFISLEHHMVRHNGVRPYQCEICQKSFVDLQSVKKHKVVHSEMRAFKCLTCDKTFTQKAYLKAHMQSHSKEKPYVCQECGMAFSLQHALKTHLLIHSGVRRYKCEVCEKSFFQAAHLKTHLLAHAVAANPQMTSRRQLARQSADAGSAVGGRKVALVAVAVQYHSTSPVPVPPSHQAIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -