Basic Information

Insect: Flexamia atlantica
Gene Symbol: -
Assembly: GCA_035578135.1
Location: JAQJVK010000008.1:40424919-40427243[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.00021 0.028 17.2 0.4 1 23 106 129 106 129 0.98

2 21 0.0004 0.051 16.3 0.3 2 23 198 220 197 220 0.96

3 21 0.0012 0.16 14.8 2.0 2 23 225 246 224 246 0.93

4 21 3.4e-05 0.0043 19.7 0.2 1 23 254 276 254 276 0.96

5 21 0.00048 0.061 16.1 0.2 1 23 280 302 280 302 0.98

6 21 1.4 1.8e+02 5.2 0.5 3 14 310 321 309 326 0.88

7 21 0.0057 0.73 12.7 0.3 1 23 336 358 336 358 0.97

8 21 4.2e-06 0.00055 22.5 0.1 2 23 365 386 365 386 0.93

9 21 1.5e-07 1.9e-05 27.1 0.6 1 23 392 414 392 414 0.99

10 21 2.6e-05 0.0033 20.0 2.7 1 23 420 442 420 442 0.96

11 21 4.6e-06 0.00059 22.4 0.8 1 23 448 470 448 470 0.98

12 21 2e-06 0.00026 23.5 0.3 1 23 476 498 476 498 0.98

13 21 3.4e-08 4.4e-06 29.1 0.7 1 23 504 526 504 526 0.98

14 21 6.4e-07 8.2e-05 25.1 0.3 1 23 532 554 532 554 0.98

15 21 3.1e-07 3.9e-05 26.1 0.1 1 23 560 582 560 582 0.97

16 21 0.00017 0.022 17.5 1.1 1 23 598 621 598 621 0.97

17 21 0.00028 0.036 16.8 1.5 1 23 638 660 638 660 0.97

18 21 2.6e-06 0.00033 23.2 1.0 1 23 666 688 666 688 0.99

19 21 1.3e-05 0.0016 21.0 3.9 1 20 694 713 694 716 0.94

20 21 0.0013 0.17 14.7 0.6 1 23 722 744 722 744 0.97

21 21 0.0022 0.28 14.0 1.5 3 23 752 772 751 772 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.00021	0.028	17.2	0.4	1	23	106	129	106	129	0.98
2	21	0.0004	0.051	16.3	0.3	2	23	198	220	197	220	0.96
3	21	0.0012	0.16	14.8	2.0	2	23	225	246	224	246	0.93
4	21	3.4e-05	0.0043	19.7	0.2	1	23	254	276	254	276	0.96
5	21	0.00048	0.061	16.1	0.2	1	23	280	302	280	302	0.98
6	21	1.4	1.8e+02	5.2	0.5	3	14	310	321	309	326	0.88
7	21	0.0057	0.73	12.7	0.3	1	23	336	358	336	358	0.97
8	21	4.2e-06	0.00055	22.5	0.1	2	23	365	386	365	386	0.93
9	21	1.5e-07	1.9e-05	27.1	0.6	1	23	392	414	392	414	0.99
10	21	2.6e-05	0.0033	20.0	2.7	1	23	420	442	420	442	0.96
11	21	4.6e-06	0.00059	22.4	0.8	1	23	448	470	448	470	0.98
12	21	2e-06	0.00026	23.5	0.3	1	23	476	498	476	498	0.98
13	21	3.4e-08	4.4e-06	29.1	0.7	1	23	504	526	504	526	0.98
14	21	6.4e-07	8.2e-05	25.1	0.3	1	23	532	554	532	554	0.98
15	21	3.1e-07	3.9e-05	26.1	0.1	1	23	560	582	560	582	0.97
16	21	0.00017	0.022	17.5	1.1	1	23	598	621	598	621	0.97
17	21	0.00028	0.036	16.8	1.5	1	23	638	660	638	660	0.97
18	21	2.6e-06	0.00033	23.2	1.0	1	23	666	688	666	688	0.99
19	21	1.3e-05	0.0016	21.0	3.9	1	20	694	713	694	716	0.94
20	21	0.0013	0.17	14.7	0.6	1	23	722	744	722	744	0.97
21	21	0.0022	0.28	14.0	1.5	3	23	752	772	751	772	0.97

Sequence Information

Coding Sequence: ATGTTACAGATGAACCAGGAAGATGCTCTGAGAGGAGTCAGTCTAGAAGCGCTGAGTCACATAATGCAGTCGTCTTGTCAGCCCTCCAGTTCCCAGTTCAACATGTTGAGTGATACCTTCAACCACCACCCGACCAACGCCTCCTATCAGACCCCGAACTGTACCATCCAGACATATAACAACTCCCAAGAGAAGAGCGACACCCCTGCAGCAGAAGCCTGTAACATTCAAACGTTTAAGAGTGTGCCGGATAAGGTCGAGGATCCAGTCGCGGAAGCGGTGTACTCTGACGATGAAGAGCACAGTGATGGGAGATTCACATGCTCTCTTTGTAAAGTGAACTTTCCAAATGCCACCGACTTGGCGAACCACAGACGCACGATGCACCTCACTCACATTATGCAGCCATCAGCACCTCATTCTGCACCTCACTTTGAGATACTCTCCAGTAGTTTTGTACAACCTTCGTATCCGAATTCGTCCACATCTGTGTCAAGTTACAACAACACACCGGAAAAAACTGAATCGCCTGTCGCTGAAGCGGTATACTCTGATGATGACGAACACAACTCTTCAAACGACATCGGTGTCATGTGCTCGGTCTGTAAGATGAATTTTTCCAACTCTGCAGAACTATTGAGTCATAGACGCTCTGTTCATCGGGGACAAATAAGCTGTGAATTTTGTGGCAAAAATTTTGCTAACACCCATAATCTTAAAATCCACTCTTTTTCCCACACCGGTGACACTAGGTCGAAGTTCTTCTGCGATTCTTGTGGGAAAGGATTCGTTAAACCCTCGGATTTAAGGCGACATGAGCTCATACACGCTGGTAGGTATTCCTGCCTAGAATGCAATATTACCTTCAATACCGCTGATGAAGTGAAGGAACACGCAAAAACACACGAAGACTTTTCCTCCAATAATTGTTCTGATTGCAACAAGGAATATACCAACAGTCAGTCTAATTCTCCTCATCTCCCTCAAGAACCGAAGAGAGAAATGTTTACTTGTGACACATGTGGCTTAGCATTGGAAAGTAAGTTCGACTTGAAAGCTCATTCGCTCAAGCACACTATAACACCTCACAATGTGTGTGCGACTTGTGGTAAATCCTTCAGTCGTCCCTCTGACTTAAACAGACATGCAGTCATACACACTGGTGAACGGCCTTACTCTTGTCCAGAGTGCGAGATGAGTTTTACCAACCAGAGCAACCTGAGGATGCATCTCATGACTCATTCTGATGTGAAGCCACATCCCTGTTCAATATGTGAAAAGTCATTTCGTCGTTCTGCCGATTTGGAACGCCATTCATGTATTCACAGTGGGGCGAGGCCATTCAGTTGCAACTTGTGTCCGATGGCATTCACCACAAGCTACAACTTGAAAATTCACCAGTTGAAACATTCTGGCGGTTTGCCATACCCTTGCACCCAATGTGAGAAAGCTTTTAGCAAACCTTCGGAACTTCAGAGGCATACTTTGATCCACTCGGGCGAACGTCCATTTACTTGTCCTCAGTGCGGGATGAACTTTTCTAATTCCAGCAATTTGAGAAACCACATGATCACTCACACTGGACGAAGGCCTTATCCTTGCAATATCTGTAAAAAAGCATTCACTAGACCCTCTGATGTCAAAAGACACGTTTTAACTCACACCGGCGCTCGCCCTTTCGCTTGTCCAATTTGTGGATTAGCCTTTGCAGATTCTTCAAATCTTAAGAAACACACACTAACACATTCCAAGCACTTGAATCACTTCAATAGATCAGTGCTTGGTCCTCCCTACCATTGTCAGATATGTGAGGTGACCTACAGCAGCTCTAGCGAGTTGGAGACACATGTCAGAAACTCTCATGCTGACGGATCTAAGGATTTCTTAGCGAAGATAAACGGGACAAAACAGTACACTTGTGCGATTTGTGGACTACGTTTCACCCATGCAATCCACTTGCAAGAGCATTCTCTCAGTCACGATCGGGAGCATTCTTTCCAGTGCGAGATTTGTGATAAGTCTTTCTCACAAGAACTTTTCTTACAGAGACACCTTCTGACCCATACAGAAGCTCGACCGTACGAATGTCCTGAATGCTTTAAATGCTTCAAAAGCTCATCACACTTAAAAAATCACATACCCATTCATTCAGGAGTGAAGCCATTTGTGTGTGGGACTTGCAACAAAGCGTTTTTAAAAAACGCCTCCCTGAGAAGACATCAAACCATACATGCCAGAGGAAGTGCGGTGGCATGCCACATTTGTGGTAAGAGTTTTCTCAACATGGAGTATCTTAAGAAACACAGTATAACTCACGAATCGTAA
Protein Sequence: MLQMNQEDALRGVSLEALSHIMQSSCQPSSSQFNMLSDTFNHHPTNASYQTPNCTIQTYNNSQEKSDTPAAEACNIQTFKSVPDKVEDPVAEAVYSDDEEHSDGRFTCSLCKVNFPNATDLANHRRTMHLTHIMQPSAPHSAPHFEILSSSFVQPSYPNSSTSVSSYNNTPEKTESPVAEAVYSDDDEHNSSNDIGVMCSVCKMNFSNSAELLSHRRSVHRGQISCEFCGKNFANTHNLKIHSFSHTGDTRSKFFCDSCGKGFVKPSDLRRHELIHAGRYSCLECNITFNTADEVKEHAKTHEDFSSNNCSDCNKEYTNSQSNSPHLPQEPKREMFTCDTCGLALESKFDLKAHSLKHTITPHNVCATCGKSFSRPSDLNRHAVIHTGERPYSCPECEMSFTNQSNLRMHLMTHSDVKPHPCSICEKSFRRSADLERHSCIHSGARPFSCNLCPMAFTTSYNLKIHQLKHSGGLPYPCTQCEKAFSKPSELQRHTLIHSGERPFTCPQCGMNFSNSSNLRNHMITHTGRRPYPCNICKKAFTRPSDVKRHVLTHTGARPFACPICGLAFADSSNLKKHTLTHSKHLNHFNRSVLGPPYHCQICEVTYSSSSELETHVRNSHADGSKDFLAKINGTKQYTCAICGLRFTHAIHLQEHSLSHDREHSFQCEICDKSFSQELFLQRHLLTHTEARPYECPECFKCFKSSSHLKNHIPIHSGVKPFVCGTCNKAFLKNASLRRHQTIHARGSAVACHICGKSFLNMEYLKKHSITHES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00052120;
90% Identity: iTF_00052120;
80% Identity: -