Fatl030478.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- TBX20
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000004.1:65645694-65656607[-]
Transcription Factor Domain
- TF Family
- T-box
- Domain
- T-box domain
- PFAM
- PF00907
- TF Group
- Unclassified Structure
- Description
- The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 4.4e-05 0.23 13.7 0.1 116 133 113 130 106 135 0.85 2 8 1.8e-08 9.3e-05 24.7 0.1 112 152 131 176 128 185 0.85 3 8 1.4e-07 0.00072 21.8 0.1 115 152 224 266 218 273 0.85 4 8 9.4e-06 0.049 15.8 0.2 116 133 315 332 308 336 0.86 5 8 8.7e-08 0.00045 22.5 0.1 112 156 333 382 330 391 0.81 6 8 2e-07 0.0011 21.3 0.2 116 151 437 477 432 484 0.82 7 8 7.4e-06 0.038 16.2 0.3 115 133 485 503 478 507 0.84 8 8 1.9e-15 1e-11 47.4 0.7 112 164 504 561 501 564 0.92
Sequence Information
- Coding Sequence
- ATGTCCGGAGATGTTGGAGGCCAGTTCAGGAGAGCGTCATCATTCGGACCAGCGCGCCCGATCCACCTCTCACTGGTGCTCAACTGGGCGATCACGGACTTGGAACAGGAGCAGTTCAAGACGATCATCTACCCCTGTTGTCATCACTGTGTTGTTACAGCTGGTGCTCAACTCGACGATCAAGGACTTGGAATAGGAGCAGTCCAGATTATCACTACCCCAGATGTTAATACTACGTTTTTTACAGCTGGTGCTCAACTTGACGATCACGGACTTGGAACAGGAGCAGTTCAAGACGTTTATATTCCTCTGGTATCAACACTGTGTTTGTTACAGCTGGTGCTCAACTCCATGCACAAGTTCCAGCCCCGGATCCACCTGGTGAAGCGGCACGAGGGCCAGCTGGTGCTCAACTCCATGCACAAGTACCAGCCCCGGATCCACCTGGTGAAGCGGCACGAGGGCCAGGTCACGGGGCCGATCACGGACTTGGAACAGGAGCAGTTCAAGACGTTTATATTCCCCTGGTATCAACACTGTGTTTGTTACAGCTGGTGCTCAACTCCATGCACAACGGCACGAGGGCCAGGTCACGGCGCCGATCACGGACTTGGAACAGGAGCAGTTCAAGACGTTTATACTCCCCTGGTGTCAACCCTGTGTGTGTTACAGCTGGTGCTCAACTCCATGCACAAGTACCAGCCCAGGATCCACCTGGTGAAGCGACACGAGGGCCAAGTCACGACGCCGATCACGGGCTTGGAACAGGAGCAGTTCAAGACGTTTATATTCCCCTGGTATCAACACTGTGTTTGTTACGGCTGGTGCTCAACTCCATGCACAACGGCACGAGGGCCAAGTCACGGCGCCGATCACGGACTTGGAACAGGAGCAGTTCAAGACGTTTATATTCCCCTGGTATCAACACTGTGTTTGTTACAGCTGGTGCTCAACTCCATGCACAAGTACCAACCCCGGATCCACCTGGTGAAGCGGCACGAGGGCCAGCTGGTGCTCAACTCCATGCACAAGTACCAGCCCCGGATCCACCTGTTGAAGCGACACGAGGGCCAGGTCACGGCGCCGATCACGGACCTGGAACAGGAGCAGTGCAAGACGTTCATCTACCCCTGGTGTCAACACTGTGTGTGTGTTACAGCTGGTGCTCAACTTCATGCACAAGCACCAGCCCAGGATCCACCTGGTGAAGCGACACGAGGGCCAAGTCACGGCGCCGATCACGGACTTGGAACAGGAGCAGTTCAAGACGTTTATATTCCCCTGGTGTCATTACTGTGTGTGTTACAGCTGGTGCTCAACTCCATGCACAAGTACCAGCCCCGGATCCACCTGTTGAAGCGACACGAGGATCAGGTCACGACGCCGATCACGGACTTAGAACAGGAGCAGTTCAAGACGTTTATATTCCCCTGGTATCAACAGTGTGTGTTACAGCTGGTGCTCAACTCCATGCACAAGTACCAGCCCCGGATCCACCTGGTGAAGCGACACGAGGGCCAGCTGGTGCTCAACTCCATGCACAAGTACCAGCCCAGGATCCACCTGGTGAAGCGACACGAGGGCCAGGTCACGGCGCCGATCACGGACTTGGAACAGGAGCAGTTCAAGACGTTCATCTACCCCGAGGCCGTCTTCACCGCCGTCACCGCCTACCAGAACCAGCTGAAGCCCCGCCGGCGCTGGGGCGCTGTCACTGTCTCTGCAGGCGCTCAGTCAGTTACCTCGGAGCCCTGGGAGGATCGCTGCTGTAGAAGGGTTGCGTGCGGCAGACACAGACAGCAGACAGGCGGCTAA
- Protein Sequence
- MSGDVGGQFRRASSFGPARPIHLSLVLNWAITDLEQEQFKTIIYPCCHHCVVTAGAQLDDQGLGIGAVQIITTPDVNTTFFTAGAQLDDHGLGTGAVQDVYIPLVSTLCLLQLVLNSMHKFQPRIHLVKRHEGQLVLNSMHKYQPRIHLVKRHEGQVTGPITDLEQEQFKTFIFPWYQHCVCYSWCSTPCTTARGPGHGADHGLGTGAVQDVYTPLVSTLCVLQLVLNSMHKYQPRIHLVKRHEGQVTTPITGLEQEQFKTFIFPWYQHCVCYGWCSTPCTTARGPSHGADHGLGTGAVQDVYIPLVSTLCLLQLVLNSMHKYQPRIHLVKRHEGQLVLNSMHKYQPRIHLLKRHEGQVTAPITDLEQEQCKTFIYPWCQHCVCVTAGAQLHAQAPAQDPPGEATRGPSHGADHGLGTGAVQDVYIPLVSLLCVLQLVLNSMHKYQPRIHLLKRHEDQVTTPITDLEQEQFKTFIFPWYQQCVLQLVLNSMHKYQPRIHLVKRHEGQLVLNSMHKYQPRIHLVKRHEGQVTAPITDLEQEQFKTFIYPEAVFTAVTAYQNQLKPRRRWGAVTVSAGAQSVTSEPWEDRCCRRVACGRHRQQTGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -