Fatl015876.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- -
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000001.1:216376187-216378667[+]
Transcription Factor Domain
- TF Family
- SAND
- Domain
- SAND domain
- PFAM
- PF01342
- TF Group
- Other Alpha-Helix Group
- Description
- The DNA binding activity of two proteins has been mapped to the SAND domain. The conserved KDWK motif is necessary for DNA binding, and it appears to be important for dimerisation [1]. This region is also found in the putative transcription factor RegA from the multicellular green alga Volvox cateri. This region of RegA is known as the VARL domain [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0039 1.8e+02 4.2 0.0 35 70 67 102 57 105 0.90 2 8 0.16 7.6e+03 -1.0 0.0 37 70 160 193 153 195 0.83 3 8 0.24 1.1e+04 -1.6 0.0 38 70 252 284 246 286 0.80 4 8 0.00049 23 7.0 0.0 35 70 340 375 331 378 0.91 5 8 0.0035 1.7e+02 4.3 0.0 35 70 431 466 421 469 0.90 6 8 0.0033 1.6e+02 4.4 0.0 37 71 524 558 517 561 0.89 7 8 0.004 1.9e+02 4.1 0.0 35 70 613 648 607 651 0.91 8 8 0.0033 1.6e+02 4.4 0.0 37 71 706 740 699 743 0.89
Sequence Information
- Coding Sequence
- ATGCGGCTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGTTGGCATTGTCAGGGCAGTCGTTACTCACCCTGTGGCGAGGCGTTATCCGGCTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGTTGGCATTGTCAGGGCAGTCGTTACTCACCCTGTGGCGAGGCGTTATGCGGCTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGTTGGCATTGTCAGGACAGTCGTTACTCACCCCGTGGCGAGGCGTTATGCGGCTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGATGGCATTGTCAGGGCAGTCGTTACTCACCCCGTGACGAGGCGTTATGCGGCTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGTTGGCATTGTCAGGGCAGTCGTTACTCACCCTGTGGCGAGGCGTTGTGCGGCTTGGATACTACACACTCACTACTCTCGTCTCGTGTTTGGTTGGCATTGTCAGGGCAGTCGTTATTCACCCCGTGGCGAGGCGTTATGCGGCTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGTTGGCATTGTCAGGGCAGTCGTTACTCACCCCGTGGCGAGGCGTTATGCGGCTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGTTGGCATTGTCAGGGCAGTCGTTACTCACCCTGTGGCGAGGCGTTGTGCGGCTTGGATACTACACTCTCACTACTCTCGTCTCGTGTTTGGTTGGCATTGTCAGGGCAGTCGTTATTCACCCCGTGGCGAGGCGTTATGCGGCTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGTTGGCATTGTCAGGGCAGTCGTTACTCACCCCGTGGCGAGGCGTTATGCGGCTTGGATACTACACACTCACTATTCTCGCCTCGTGTTTGGTTGGCATTGTCAGGACAGTCGTTACTCACCCCGTGGCAAAGCGTTATCCGACTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGTTGGCATTGTCAGGACAGTCGTTACTCAACCCGTGGCGAGGCGTTATCCGGCTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGTTGGCATTGTCAGGGCAGTCGTTATTCACCCCGTGGCGAGGCGTTATGCGGCTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGTTGGCATTGTCAGGGCAGTCGTTACTCACCCTGTGGCGAGGCGTTATGCGGCTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGTTGGCATTGTCAGGGCAGTCGTTACTCACCCTGTGGCGAGGCGTTATGCGGCTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGTTGGCATTGTCAGGACAGTCGTTACTCACCCCGTGGCGAGGCGTTATGCGGCTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGATGGCATTGTCAGGGCAGTCGTTACTCATCCCGTGACGAGGCGTTATGCGGCTTGGATACTACACACTCACTACCCTCGCCTCGTGTTTGGTTGGCATTGTCAGGGCAGTCGTTACTCACCCTGTGGCGAGGCGTTGTGCGGCTTGGATACTACACACTCACTACTCTCGTCTCGTGTTTGGTTGGCATTGTCAGGGCAGTCGTTATTCACCCCGTGGCGAGGCGTTATGCGGCTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGTTGGCATTGTCAGGGCAGTCGTTACTCACCCCGTGGCGAGGCGTTATGCGGCTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGTTGGCATTGTCAGGGCAGTCGTTACTCACCCTGTGGCGAGGCGTTATGCGGCTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGTTGGCATTGTCAGGACAGTCGTTACTCACCCCGTGGCGAAGCGTTATGCGGCTTGGATACTACACACTCACTACTCTCGCCTCGTGTTTGGATGGCATTGTCAGGGCAGTCGTTACTCATCCCGTGACGAGGCGTTATGCGGCTTGGATACTACACACTCACTACCCTCGCCTCGTGTTTGGTTGGCATTGTCAGGGCAGTCGTTACTCACCCTGTGGCGAGGCGTTGTGCGGCTTGGATACTACACACTCACTACTCTCGTCTCGTGTTTGGTTGGCATTGTCAGGGCAGTCGTTATTCACCCCGTGGCGAGGCGTTATGCGGCTTGTATACTACACACTCACTACTCTCGCCTCGTGTTTGGTTGGCATTGTCAGGACAGTCGTTACTCACCCCGTGGCAAGGCGTTATGCGGCTTGGCTACTGCAAACTCACTAATTTCGTCTCTTGTTTGGTTGGAAGAATCAAGAAAATCTTTATATTTACCCGGTGGCAAGCCGTTGCCCGGTCTGGTTGCACTGTGA
- Protein Sequence
- MRLGYYTLTTLASCLVGIVRAVVTHPVARRYPAWILHTHYSRLVFGWHCQGSRYSPCGEALCGLDTTHSLLSPRVWLALSGQSLLTPWRGVMRLGYYTLTTLASCLDGIVRAVVTHPVTRRYAAWILHTHYSRLVFGWHCQGSRYSPCGEALCGLDTTHSLLSSRVWLALSGQSLFTPWRGVMRLGYYTLTTLASCLVGIVRAVVTHPVARRYAAWILHTHYSRLVFGWHCQGSRYSPCGEALCGLDTTLSLLSSRVWLALSGQSLFTPWRGVMRLGYYTLTTLASCLVGIVRAVVTHPVARRYAAWILHTHYSRLVFGWHCQDSRYSPRGKALSDLDTTHSLLSPRVWLALSGQSLLNPWRGVIRLGYYTLTTLASCLVGIVRAVVIHPVARRYAAWILHTHYSRLVFGWHCQGSRYSPCGEALCGLDTTHSLLSPRVWLALSGQSLLTLWRGVMRLGYYTLTTLASCLVGIVRTVVTHPVARRYAAWILHTHYSRLVFGWHCQGSRYSSRDEALCGLDTTHSLPSPRVWLALSGQSLLTLWRGVVRLGYYTLTTLVSCLVGIVRAVVIHPVARRYAAWILHTHYSRLVFGWHCQGSRYSPRGEALCGLDTTHSLLSPRVWLALSGQSLLTLWRGVMRLGYYTLTTLASCLVGIVRTVVTHPVAKRYAAWILHTHYSRLVFGWHCQGSRYSSRDEALCGLDTTHSLPSPRVWLALSGQSLLTLWRGVVRLGYYTLTTLVSCLVGIVRAVVIHPVARRYAACILHTHYSRLVFGWHCQDSRYSPRGKALCGLATANSLISSLVWLEESRKSLYLPGGKPLPGLVAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -