Fatl068603.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- -
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000018.1:12969616-12977775[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-05 0.019 16.9 0.0 1 38 133 169 133 175 0.91 2 2 0.0013 1.4 11.0 0.1 8 41 171 205 169 207 0.73
Sequence Information
- Coding Sequence
- ATGGAGAGTAGTCGCTGCTCGTGCGCGGTTCTTGCGCAAAATTCACTCGCTAAAGCAGGAACCTACACTAAACGACCGGGTGTGAACAATCACCTGACAGTTCTGGAAACAGTAACCGCAAAAGAAGGAAGCCCTTCGAACCATGAAGATGGAAAAGACAATGGAGACAATTTGCACGTGAAGCAGGAACTTCTCTGTGCCGATGATGAGTCCATGTGCCCCGAGAACATTGTAGAAACTGCGGAACAGACTGATTACAATGAAGATGAAAATGGAGCCAGCTTTACAATTATTACTGATGAAAATGAAGAGCAGTCTGATTACAGCTTACAAATTTCTGCTCCCTTGCAAATGACTAAAAGAAAACGTAAGAGAGAATTTTCAAAAAGAGATTACAGTGAGGACGCACTATCAGCCGCGCTGGACGACCTGGCGCGGGGCCGCAGTCTGCTGGAGACGGCCAACACCCACCACATCCCGCGGTCCACGCTCTACGTCCGCGCGCGCACCGCGCTGGACGACCTGGCGCAGGGCTGCAGTCTGCTGGAGACGGCCAACACCCACCACATCCCGCGGTCCACGCTCTATGCCCGCGCGCACATGAGGACGCACTATGAGCCGCGCTGGACGACCTTGCGCGGGGCCGCAGTCTGCTGGAGACGGCCAACACCCACCACATCCCGCGGTCCACGCTCTATGACCGCGCGCGCAGTTACATCTGACTAA
- Protein Sequence
- MESSRCSCAVLAQNSLAKAGTYTKRPGVNNHLTVLETVTAKEGSPSNHEDGKDNGDNLHVKQELLCADDESMCPENIVETAEQTDYNEDENGASFTIITDENEEQSDYSLQISAPLQMTKRKRKREFSKRDYSEDALSAALDDLARGRSLLETANTHHIPRSTLYVRARTALDDLAQGCSLLETANTHHIPRSTLYARAHMRTHYEPRWTTLRGAAVCWRRPTPTTSRGPRSMTARAVTSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -