Fatl043370.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- -
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000007.1:37097718-37101960[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.94 1e+03 1.8 0.0 17 29 148 160 145 172 0.88 2 12 0.94 1e+03 1.8 0.0 17 29 172 184 166 195 0.90 3 12 1.1 1.2e+03 1.7 0.0 17 29 231 243 222 246 0.92 4 12 1.1 1.2e+03 1.6 0.0 17 29 347 359 338 362 0.92 5 12 1 1.1e+03 1.7 0.0 17 29 416 428 407 433 0.92 6 12 1.2 1.3e+03 1.5 0.0 17 29 462 474 458 477 0.92 7 12 0.78 8.4e+02 2.1 0.0 17 29 532 544 512 549 0.84 8 12 1.2 1.3e+03 1.5 0.0 17 29 578 590 574 593 0.92 9 12 0.85 9.1e+02 2.0 0.0 17 29 624 636 606 640 0.85 10 12 1.1 1.2e+03 1.6 0.0 17 29 682 694 673 696 0.92 11 12 1.2 1.3e+03 1.5 0.0 17 29 706 718 700 720 0.93 12 12 0.96 1e+03 1.8 0.0 17 29 787 799 770 802 0.90
Sequence Information
- Coding Sequence
- ATGAGAAACCTAGCTCTGCGCAAGCTACTAACATTCAGCGACAGTGTTAACATGCAGGGGAGGCAGAATGTAGGGCATGTCAGTGTGTGTCGTGCTCTGACAGCAGTACGGCATGTCAGTGTGTGTCGTGCTCTGACAGCAGTACGGCATGTCAGTGTGTGTCGTGCTCTGACAGCAGTACGGCATGTCAGTGTGTGTCGTGCTCTGACAGCAGTACGGCATGTCAGTGTGTGTCGTGCTCTGACAGCAGTACGGCATGTCAGTGTGTGTCGTGCTCTGGCTGCATGTGCGGCATATCAGTGTGTGTCGTGCTCTGGCTGCATGTGCGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCTCTGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCTCTGGCTGCATGTGCGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCTCTGGCTGCATGTGCGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCTCTGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCTCTGGCTGCATGTGCGGCATATCAGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCGTGTGTGTCGTGCAGGCTGCATGTCCGGCATATCGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCTCTGGCTGCATGTGCGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTTGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCTCTGGCTGCATGTGCGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGCGCTCTGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCAAGTGCGGCATATCGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCGTATGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATGTCAGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCAGTGTGTGTCGTGCAGGCTGCATGTGCGGCATATCGTGTGTGTCGTGCAGGCTGCATGTACGGCATATCGTGTGTGTCGTGCAGGCTGCATGTACGGCATGTCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATGTCAGTGTGTGTCGTGCAGGCTGCATGTACGGCATGTCAGTGTGTGTCGTGCGGGCTGCATGCTCGACTGCTCGGTGCTGCACCACCGTTTCCGCCACCGCTCGATAAAACTTTACCTGAGATCCGATCTGATCTCTTTCTGTCTCTCTCCCGCCTCCCCCGCGATCTCCGCGTCCCTCGTCGCTCCAATGGCGTCGCGGCGCCTCGCGCCGACGCCGGGCGACTCCGGGACTCCGCCTCGGTCGCCCCCTGCGCCCCCTGTCACCCCCTACACCCCCTTCAACCCCGACCCCTCAAACCCCTGGGACCTCGTAGATTTAATCTGCACATTATCAAATATGCTGTTGTTCTTCGCTCAATAA
- Protein Sequence
- MRNLALRKLLTFSDSVNMQGRQNVGHVSVCRALTAVRHVSVCRALTAVRHVSVCRALTAVRHVSVCRALTAVRHVSVCRALTAVRHVSVCRALAACAAYQCVSCSGCMCGISVCVVQAACTAYQCVSCSGCMYGISVCVVLWLHVRHISVCRAGCMYGISVCVVLWLHVRHISVCRAGCMYGISVCVVLWLHVRHISVCRALAACAAYQCVVQAACTAYQCVSCRLHVRHISVCRAGCMYGISCVSCRLHVRHIVCVVQAACAAYQCVSCRLHVRHIVCVVQAACAAYRVCRAGCMCGISVCVVQAACTAYQCVSCSGCMCGISVCVVQAACTAYQCVLCRLHVRHISVCRAGCMYGISCVSCRLHVRHIVCVVQAACAAYRVCRAGCMCGISVCVVQAACTAYQCVSCRLHVRHISVCRAGCMYGISVCVVQAACTAYRVCRAGCMCGISCVSCRLHVRHISVCRAGCMYGISCVSCRLHVRHIVCVVQAACAAYQCVSCRLHVRHISVCRALAACAAYQCVSCRLHVRHISVCRAGCMYGISVCVVQAACTAYRVCRAGCMCGISCVSCRLHVRHISVCRAGCMYGISCVSCRLHVRHIVCVVQAACAAYQCVSCRLHVRHISVCRAGCMYGISVCVVQAACTAYQCVSCRLHVRHIVCVVQAACTAYQCVSCRLHVRHISVCRAGCMYGISVCVALWLHVRHISVCRAGCMYGISVCVVQAASAAYRVCRAGCMCGISYVSCRLHVRHISVCRAGCMCGISVCVVQAACTACQCVSCRLHVRHISVCRAGCMYGISVCVVQAACTAYQCVSCRLHVRHIVCVVQAACTAYRVCRAGCMYGMSVCVVQAACTACQCVSCRLHVRHVSVCRAGCMLDCSVLHHRFRHRSIKLYLRSDLISFCLSPASPAISASLVAPMASRRLAPTPGDSGTPPRSPPAPPVTPYTPFNPDPSNPWDLVDLICTLSNMLLFFAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -