Fatl049133.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- -
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000009.1:19982373-19984274[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.59 6.3e+02 2.5 0.0 10 28 42 62 39 62 0.85 2 9 0.12 1.3e+02 4.7 0.0 10 28 106 126 103 126 0.91 3 9 0.1 1.1e+02 4.9 0.0 10 28 170 190 167 192 0.91 4 9 0.18 1.9e+02 4.1 0.0 10 28 234 254 231 254 0.91 5 9 5.4 5.8e+03 -0.6 0.0 10 28 298 318 296 318 0.89 6 9 0.12 1.3e+02 4.7 0.0 10 28 383 403 380 403 0.91 7 9 0.07 76 5.4 0.0 10 28 447 467 444 467 0.91 8 9 0.07 76 5.4 0.0 10 28 511 531 508 531 0.91 9 9 1.5 1.6e+03 1.2 0.0 10 28 575 595 572 595 0.83
Sequence Information
- Coding Sequence
- ATGCTGGACACTGGAGGGAGGCACCACGGTACGACAGGCACTGGCGGTGTACGGCGTAGTTTGCATGCTGGACACTGGAGGGAGGCACCACGGTACGACAGGCACTGGCGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGAAGGCACCACGGTACGACAGGCACTGGCGGTGTACGGCGTAGTTTGCATGCTGGACGCTGGAGGAAGGCACCATGGTACGACAGGCACGGGCGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGGAGGCACCACGGTACGACAGGCACTGGCGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGGAGGCACCACGGTACGACAGGCACTGGCGGTGTACGGCGTAGTTTGCATGCTGGGCACTGGAGGAAGGCACCATGGTACGACAGGCACTGGCGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGGAGGCACCACGGTACGACAGGCACTGGCGGTGTTCGGCGTCGTTTGCATGCTGGACACTGGAGGGAGGCACCACGGTACGACAGGCACTGGCGGTGTACGGCGTACTTTACATGCTGGACACTGGAGGAAGGCACCATGGTACGACAGGCACTGGCGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGGAGGCACCACGGTACGACAGGCACTGGCGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGGAAGCACCACGGTACGACAGGCACTGGCGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGGAAGCACCATGGTACGACAGGCACTGGCGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGGAAGCACCACGGTACGACAAGCACTGGCGGTGTTCGGCGTCGTTTGCATGCTGGACACTGGAGGGAAGCACCATGGTACGACAGGCACTGGCGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGGAAGCACCACGGTACGACAAGCACTGGCGGTGTTCGGCGTCGTTTGCATGCTGGGCGCTGGAGGGAGGCACCACGGTACGAGAGGCACAGGCGATGTTCGGCGTCGTTTGCATGCTGGGCGCTGGAGGAAGCACCACGGTACGACAGGCACTGGCGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGGAGGCACCACGGTACGACAGGCACTGGCGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGGAGGCACCACGGTACGACAGGCACTGGTGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGGAGGCACCACGGTACGACAGGCACTGGCGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGGAGGCACCACGGTACGACAGGCACTGGTGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGGAGGCACCACGGTACGACAGGCACTGGTGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGGAGGCACCACGGTACGACAGGCACCGGTGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGGAGGCACCACGGTACGACAGGCACTGGTGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGGAGGCACCACGGTACGACAGGCACCGGTGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGGAGGCACCACGGTACGACAGGCACCGGTGGTGTACGGCGTCGTTTGCATGCTGGACACTGGAGGAAGGCACCACGGTACGACAGGCACTGGCGGTGTTCGGCGTCGTTTGCATGCTGGACACTGGAGGGAGGCACCACGGTACGACAGGCACTGGTGGTGTACGGCGTCGTTTGCATGCTGGGCGCTGGAGGAAGGcgcgtattatttttataaccgGGTGA
- Protein Sequence
- MLDTGGRHHGTTGTGGVRRSLHAGHWREAPRYDRHWRCTASFACWTLEEGTTVRQALAVYGVVCMLDAGGRHHGTTGTGGVRRRLHAGHWREAPRYDRHWRCTASFACWTLEGGTTVRQALAVYGVVCMLGTGGRHHGTTGTGGVRRRLHAGHWREAPRYDRHWRCSASFACWTLEGGTTVRQALAVYGVLYMLDTGGRHHGTTGTGGVRRRLHAGHWREAPRYDRHWRCTASFACWTLEGSTTVRQALAVYGVVCMLDTGGKHHGTTGTGGVRRRLHAGHWREAPRYDKHWRCSASFACWTLEGSTMVRQALAVYGVVCMLDTGGKHHGTTSTGGVRRRLHAGRWREAPRYERHRRCSASFACWALEEAPRYDRHWRCTASFACWTLEGGTTVRQALAVYGVVCMLDTGGRHHGTTGTGGVRRRLHAGHWREAPRYDRHWRCTASFACWTLEGGTTVRQALVVYGVVCMLDTGGRHHGTTGTGGVRRRLHAGHWREAPRYDRHRWCTASFACWTLEGGTTVRQALVVYGVVCMLDTGGRHHGTTGTGGVRRRLHAGHWREAPRYDRHRWCTASFACWTLEEGTTVRQALAVFGVVCMLDTGGRHHGTTGTGGVRRRLHAGRWRKARIIFITG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -