Basic Information

Insect: Flexamia atlantica
Gene Symbol: -
Assembly: GCA_035578135.1
Location: JAQJVK010000018.1:12978089-12984963[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.8 8.7e+02 2.1 0.0 2 30 34 61 33 62 0.85

2 7 5.7 6.1e+03 -0.7 0.0 2 30 62 89 61 90 0.82

3 7 1.6e-05 0.017 17.1 0.1 2 39 90 126 89 132 0.93

4 7 0.015 16 7.6 0.1 18 37 136 155 126 161 0.76

5 7 1.2e-10 1.2e-07 33.6 0.0 1 39 170 207 170 210 0.94

6 7 0.0045 4.9 9.3 0.0 19 39 242 262 230 268 0.75

7 7 3.1e-09 3.3e-06 29.0 0.3 5 42 289 326 288 329 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.8	8.7e+02	2.1	0.0	2	30	34	61	33	62	0.85
2	7	5.7	6.1e+03	-0.7	0.0	2	30	62	89	61	90	0.82
3	7	1.6e-05	0.017	17.1	0.1	2	39	90	126	89	132	0.93
4	7	0.015	16	7.6	0.1	18	37	136	155	126	161	0.76
5	7	1.2e-10	1.2e-07	33.6	0.0	1	39	170	207	170	210	0.94
6	7	0.0045	4.9	9.3	0.0	19	39	242	262	230	268	0.75
7	7	3.1e-09	3.3e-06	29.0	0.3	5	42	289	326	288	329	0.91

Sequence Information

Coding Sequence: ATGAGCCGCGCTGGACGACCTGGCGCGGGGCCGCAGTCTGCTGGAGACGGCCAACACCCACCACATCCCGCGGTCCACGCTCTACGCCTGCGCGCGCATGAGGATGCGCTGTCAGCCGCGCTGGACGACCTGGCGCGGGGCCGCAGTCTACTGGAGACGGCCAACACCCACCACATCCCGCGTGAGGACGTGCTGTCAGCCGCGCTGGACGACCTGGCGCGGGGCCGCAGTCTACTGGAGACGGCCAACACCCACCACATCCCGCGTGAGGACGCGCTGTCAGCCGCGCTGGACGACCTGGCGCGGGGCCGCAGTCTGCTGGAGACGGCCAACACCCACCACATCCCGCGGTCCACGCTCTACGCCCGCGCGCGCACCGCGCTGGACGACCTGGCGCGGGGCCGCAGTCTGCTGGAGACGGCCAACACCCACCACATCCCACGGTCCACGCTCTACGCCCGCGCGCGCAGTTACGGCATCTCGCCCACCATAACGCGGCACGAGTACTCGGAGGAGAAACTGGCCGCCGCTGTCGACATGGTCAAAGCTGGGGCGAGCCTACAGTCGGCATCAGTCATGTACGGCATCCCCAAGACGGTGTTGTGGCGGAGAGTGCAGAAGGATATCGGCTGCTATGCACTGAGCCGTCGGGCCAAACTTCGCCAGCGGTATCTGCCCCACGCCAAGGAGGCTGCAGTCAGGGCGCTCGAGAACGgagagaaaataaacaaagtcgCCGCCATATATAAAataCCAAAGACAACATTGTTCCGAGAGAAGAGCCGGCTGGTGGAGATGGGCAGACTGCCGGCGTCGTGTCTCAACAAGCGGGAGCCGAACAAGGACAGCTACAAGCAGCTGCGGCTGACGCAGGCCGTGGCCGCCTGCAAGGAGGGCCGCATGTCCCAGGCCGCCGCCTCCTCCACGTTCAAGgTTTCAAAAACAACGATATGGAGGAGATTGCAGCAAAACAGAGGAAGAAAACAATTCCAGTTTGTACAACCGAAAAGCGAACCTGTCGAGGGAAATGTGGAGTTTGAAGAGATCGTATCCGAGATACCAGTGACTTACGCGGAAGACAGTCCATACACGGAAGCTTCATTCATCATCCTGGCCCCGGACGGGGAGCTCTCGACAGGTTACGACGTGACGGAACAGATGGTCGTGGACAGTGTGTTGGTAGCGGACAGTGTGGAGGATGTGGGGTCCGTCATAGAGATACAAGAGACACCCGCTTGTGTCGAGGACTTGACCACGAGTCAGACTGAGGAGTGTTCTTTACAGACGGAGGAGTGTTCTTTACAGACCGAAGAGTGTTCATTACAGACCGAAGAGTGTTCTTTACAGACCGAGGAGTGTTCTTTAGAGTCGTAA
Protein Sequence: MSRAGRPGAGPQSAGDGQHPPHPAVHALRLRAHEDALSAALDDLARGRSLLETANTHHIPREDVLSAALDDLARGRSLLETANTHHIPREDALSAALDDLARGRSLLETANTHHIPRSTLYARARTALDDLARGRSLLETANTHHIPRSTLYARARSYGISPTITRHEYSEEKLAAAVDMVKAGASLQSASVMYGIPKTVLWRRVQKDIGCYALSRRAKLRQRYLPHAKEAAVRALENGEKINKVAAIYKIPKTTLFREKSRLVEMGRLPASCLNKREPNKDSYKQLRLTQAVAACKEGRMSQAAASSTFKVSKTTIWRRLQQNRGRKQFQFVQPKSEPVEGNVEFEEIVSEIPVTYAEDSPYTEASFIILAPDGELSTGYDVTEQMVVDSVLVADSVEDVGSVIEIQETPACVEDLTTSQTEECSLQTEECSLQTEECSLQTEECSLQTEECSLES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -