Fyps027111.1
Basic Information
- Insect
- Fissipunctia ypsillon
- Gene Symbol
- -
- Assembly
- GCA_947568875.1
- Location
- OX387669.1:3145797-3148401[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0019 0.2 13.0 5.9 1 23 77 100 77 100 0.97 2 17 0.00025 0.027 15.7 0.5 1 23 109 132 109 132 0.97 3 17 0.011 1.1 10.6 0.4 2 23 145 167 145 167 0.97 4 17 0.00028 0.03 15.6 1.4 1 23 176 199 176 199 0.97 5 17 0.00024 0.025 15.8 2.9 1 23 211 234 211 235 0.96 6 17 0.00011 0.011 16.9 0.7 2 23 262 284 261 284 0.97 7 17 0.001 0.11 13.8 1.2 2 23 294 316 293 316 0.96 8 17 0.06 6.3 8.3 1.2 3 19 322 338 320 341 0.92 9 17 0.00045 0.047 15.0 0.5 2 21 346 365 345 368 0.94 10 17 0.29 30 6.1 2.2 3 23 378 399 377 399 0.93 11 17 0.00021 0.022 16.0 3.5 1 23 404 427 404 427 0.94 12 17 0.00022 0.024 15.9 1.4 2 23 439 461 438 461 0.96 13 17 0.15 16 7.0 1.9 1 23 488 511 488 512 0.93 14 17 0.78 83 4.8 0.3 2 23 518 539 517 539 0.89 15 17 0.12 12 7.4 1.7 2 23 545 566 544 566 0.97 16 17 0.015 1.5 10.2 0.1 1 23 632 654 632 654 0.97 17 17 0.063 6.7 8.2 1.9 1 23 660 683 660 683 0.97
Sequence Information
- Coding Sequence
- ATGGTGATTGGTACCGCTACTTTTGGAGACAACGGCCTGGTTCACGAAGATCATCACAATGACGATAGTCCAGAATCAGCCGTGAAAATAGAGCCGCAGAACCACGATGCCGTCCTTCTCACATTCGAGAGCGTCATCAACGAGAAGAAACCACTTATCGCCGATAGCAGCGAAATGTTTCAATTTTCGAAGAATGAGCTGCCAGTGCCACCCAAACAGGCCCCAAATCATGTCTGCAAAGTCTGCCACCTAGTCTTTCAATCACAGAAAACATTACGAATGCATCAGAAAAGAAAACATAAGTCTTTCAGAAAGTCCTTCAAACATGTTTGTGATTACTGTGGCATGGCCTACGAAATGAAGAACAGTTTGGTAGCGCATATTAAGAGGAAACATGGGCCTGATTCAAGGCCAGATGATAGAGAGGAACGGACTTGTGAGATATGTGCTTTGGTCTTCAAAGGAATGGCTCGGTTACGCATGCATATGAGGAGAAAACATGGCTCTTTCCAAGAATCTTTTAAACACGTTTGCAAAGACTGCGGTTTAACGTATGATAAGTACAGAAGTTTGATAGTCCATATACAACGTAAACATTCAAATAATCAGAAACCTGAAATCAATCAATGGTACAACTGTCCGTTCTGTCCTAAGATATTTACGAAAAGAGAAACTTATGCTAGACACGTGCAGAGAAAGCATCACGTGTCAGACGAAAGTATAAAACAAGAAAACACTGAAAATTATTTGGAGAATTGTAAAAATGAAGAAACTGGTGAAATAACTTGTAAAGAGTGCCCTCTAGTCTTTTCTTCTATTAACTTCTTAAAACTTCATATGAGAAGGAAACATAATGCGTTGAGAGAAGATTTCAGATTGAAGTGCCGGATTTGTAACTTGTCTTACGATAAAATCGAGAGTTTGAAGAGGCACGTGAGAAGAAAACACGATAAAGGATCTCACTGCGAAGTTTGTAACAAACAATTTGATACGCGAGAGATGTATCTCAACCATTCTCACGTGAAAGCTATCAAGGAGTGCAATATTTGCGGACTGATCTTCGCATCACAAGGTGGGTTAGCGAAACATTTGAGGTGCACACACAAATTAGATTCACCCAAGACAGTCTTCTGCAATCTATGCAACGAAGGTTTTCACGACAAACGACAGTTGAAACCGCATTTTATGAAAGTGCATTTAAAAGTATCGTACACTTGTCGATATTGCAAAAAAGTTTTTAAGGCGAAAGAGAGTTATCGACGGCACATATTATTTAAGCACCCTACTTCAAATCATGTTAACGTTCACATGCAAAAATGCGAACAATGTAGTGCGACTTTTAAGGACGAATTTGATCTTTGTCGTCATATAAATATATTTCATGGTCGCCCTGAAGATATGACGAAAGAAGACAAAGAAATGATAGAAATAAAAAAAGAAGATCCGGATATAAAGGACTGTTTCCAATGCACCAAGTGCTCAGATACATTCTTAACTTGGGAACAGTTGAAATTACACTATGAAGCAAATCATCACAATATAGAAGAAACACAATGTCAAATATGTGGGGAAATACTCCCAGGAAACGAATTACAAAAGCACATAAAGAATCTTCACACGGATACAGAAATGCAGTGTAAATACTGTGAATTTAAGACGAATATTAGAGTAAGTTTGACACAACACACGCTGAGGCATAAAAATGCCGAAACAATTCACTGTGAATATACTGGTTGCAAATATAAAACGTTTTACGATGGTGCTATGGAGAAGCATAAAAGAAAACATGCTGATCTAGGAGTCAAACTCCAATGTACGCAGTGCCCGTTCCAATCGATGAATAAATACATCCTGAAATATCATGAGGAAGCTCATGAGACAGGGAAAAAACGGTACATGTGTGACCAATGCGACTACGCAACGATTTTACCAGCCAATCTTGTGCAGCATAAGTATAAGCATTCTACAGTAAAGAGGTTCAAATGTGAAGTGTGTCCGTTCGCAACGAAATACAATACATCACTGAGGTTTCATGTTAGGAAAAAACACTGTGATTTACCGACATTCAGTTAA
- Protein Sequence
- MVIGTATFGDNGLVHEDHHNDDSPESAVKIEPQNHDAVLLTFESVINEKKPLIADSSEMFQFSKNELPVPPKQAPNHVCKVCHLVFQSQKTLRMHQKRKHKSFRKSFKHVCDYCGMAYEMKNSLVAHIKRKHGPDSRPDDREERTCEICALVFKGMARLRMHMRRKHGSFQESFKHVCKDCGLTYDKYRSLIVHIQRKHSNNQKPEINQWYNCPFCPKIFTKRETYARHVQRKHHVSDESIKQENTENYLENCKNEETGEITCKECPLVFSSINFLKLHMRRKHNALREDFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCEVCNKQFDTREMYLNHSHVKAIKECNICGLIFASQGGLAKHLRCTHKLDSPKTVFCNLCNEGFHDKRQLKPHFMKVHLKVSYTCRYCKKVFKAKESYRRHILFKHPTSNHVNVHMQKCEQCSATFKDEFDLCRHINIFHGRPEDMTKEDKEMIEIKKEDPDIKDCFQCTKCSDTFLTWEQLKLHYEANHHNIEETQCQICGEILPGNELQKHIKNLHTDTEMQCKYCEFKTNIRVSLTQHTLRHKNAETIHCEYTGCKYKTFYDGAMEKHKRKHADLGVKLQCTQCPFQSMNKYILKYHEEAHETGKKRYMCDQCDYATILPANLVQHKYKHSTVKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327297;
- 90% Identity
- iTF_00974040;
- 80% Identity
- -