Fyps024737.1
Basic Information
- Insect
- Fissipunctia ypsillon
- Gene Symbol
- -
- Assembly
- GCA_947568875.1
- Location
- OX387660.1:14434833-14465882[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.15 16 7.0 0.8 6 20 12 26 6 28 0.86 2 12 0.065 6.9 8.2 0.2 2 20 34 52 33 54 0.93 3 12 0.55 58 5.2 0.5 1 12 213 224 213 233 0.83 4 12 3e-05 0.0032 18.7 0.5 1 23 354 376 354 376 0.99 5 12 0.26 27 6.3 1.3 1 23 401 422 401 422 0.87 6 12 0.00021 0.022 16.0 0.3 3 23 430 450 428 450 0.96 7 12 0.00061 0.065 14.5 2.3 1 23 466 488 466 488 0.98 8 12 1.1e-06 0.00012 23.1 4.5 1 23 494 516 494 516 0.98 9 12 0.00041 0.044 15.1 5.2 1 23 522 544 522 544 0.97 10 12 7.1e-06 0.00075 20.6 0.4 1 23 550 572 550 572 0.98 11 12 0.00034 0.036 15.3 1.1 1 23 576 598 576 598 0.98 12 12 0.00015 0.016 16.4 0.1 1 23 606 629 606 629 0.96
Sequence Information
- Coding Sequence
- ATGGGAGGCCAGCCGTTGAATTGCCCCGTTTGTTGCAATACGACTTTTAGTTCTAAACAATCTCTACTTGAGCACTTAACTAATGCTTTAGAGAATGTATATTGTCCTGTTTGTAACTACAAATGCCCCTCATTACCACATCTTGTAGAGCATTTGGCTCAGGATAATTGTCAGCAAACTAACAATGTACATACCATTATATTTGAGCGCCGATCAGATGAGGACAACATTGAAAACTCATCAGTTATTGGAAATTCTGAAATTAAAGTATATCAGAATGAAATACATACTAATGATGGGAATGACTTTACAACAGAACAGACTTACGAAACTCAGGTGGGTCTGAATGATGCCAATAAAATGTATGTGGAATTGTTTAGCAAGCAGTTGAAACCATGCCTTCAAACACGGGAATTTAAATTGGTGAAGGAAAATGGCGAGAGCCGGTACATGATTGTCACTCAGGAAGATAGCGATTTGAATGCAGGAAGCACTATTGTAACTAAACAAAATGTTGATGGAACTATATCACTGACTTCTGTTAAAGATATGAACCTGGGTTCAGAGAATTTAATAACACCAGACAATGTACAAGAAACTCAAGAAGATAATCAAGAAGATAGTCAGGAGGAGATCTACAGCTGTAACACTTGCAAAGTGTCATTCTCGTCTGTTATAGAGCACATACAGAACTACCATAATGATCAAGATGTTGTTGTGGAGGAGCCAATGGAAGAGGGTCAGACTGAGTCAGTCCCTGAATACGAGCCAATGGAGAATGAAGACACATCGGTGACCACAGACAAGCAGACACCGCGGCGCGTCATCACTGACACGGGCGATATTGTGGAGGAGCCACTCATGTTTAAATCTGGTGATCAAATGATTTCATCAGATCCACTGAGCTTGGATCAAACGCAAGAACCAAAAAAAGCGGAGGAAAAAGGATTGCGCGTCGTCACGAAACGCTTCCTGCAGGTGGACAAACTCTGCGACAGTGTCATCAAAGATGCAATCCAGGCTGACGCAAAAGACTCTATCGTCACTGGGCCAGTATCGTACGAATGTGCTGTATGCAGCACGGTCTTCCCAACTAACAAGTCTTTGAAACTACACAAACGGATGCACGATCCAGTCAAAGCACGTCCCATAGAGCCTCCGGTAGAAAACACAGACGGTTCAGAAGTTAGTGAAGGCAGATACCGATGTACTTACTGCAACAAAATGATCCCTAATGACTACAAGACTATCCACCAGAACTCACACAAAACCTCGGAGAAAATGAACTGCGGAATTTGCAATAAGAAATTTACATCTATAGAGTATCTAGAAATGCATACGAATGTACATAATGTGGATAAGGCGCCCATGAACAATCAAGATAAGAACCTACCATACAGTTGTTTGTATTGCAACAGAAGATTTGCGAGGCCGCACGAAAAAGTGAAACATGAAAGGATACATACAGGTGAGAAGCCCCACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACTCTGCACATGCGCACGCATACAGGCGCGCGCCCGTACGCCTGCCCGCACTGCGGCAAGAGATTCAAAGCACACAGCGTGTACAACCACCATTTGCTGACGCACTCGGAAGTACGCGCCTACAAGTGCCCGTTCTGTCCCAAAGCGTTCAAGACGTCCGTGCAACTCGCCGGACACAAGAACTCGCATACCAAGCCATTTTCTTGCCAACATTGTAATAGGCCATTCGCGTCTTTATACGCGGTTCGGGTCCACACAGAAACACATGCGCGTCAGAACAACCTGAAATTCTCGTGCGAACTATGCGGCGCCAGCTACGCGAGAGCCTTCGCTCTTAAGGACCACATCAAGCAGGCCCACAATGAACATAAACAAAAGCAGTCGATTCCCGGCGATGAAGACTGGTTGACAAAAGACAACTCGGATACGGATGGAATACCGGTACTCAACAAAGATTTAACGCATGAGATAGACCTGGGAATAACGGGCAACGAACTAATAGTTCCTTAA
- Protein Sequence
- MGGQPLNCPVCCNTTFSSKQSLLEHLTNALENVYCPVCNYKCPSLPHLVEHLAQDNCQQTNNVHTIIFERRSDEDNIENSSVIGNSEIKVYQNEIHTNDGNDFTTEQTYETQVGLNDANKMYVELFSKQLKPCLQTREFKLVKENGESRYMIVTQEDSDLNAGSTIVTKQNVDGTISLTSVKDMNLGSENLITPDNVQETQEDNQEDSQEEIYSCNTCKVSFSSVIEHIQNYHNDQDVVVEEPMEEGQTESVPEYEPMENEDTSVTTDKQTPRRVITDTGDIVEEPLMFKSGDQMISSDPLSLDQTQEPKKAEEKGLRVVTKRFLQVDKLCDSVIKDAIQADAKDSIVTGPVSYECAVCSTVFPTNKSLKLHKRMHDPVKARPIEPPVENTDGSEVSEGRYRCTYCNKMIPNDYKTIHQNSHKTSEKMNCGICNKKFTSIEYLEMHTNVHNVDKAPMNNQDKNLPYSCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCGKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHARQNNLKFSCELCGASYARAFALKDHIKQAHNEHKQKQSIPGDEDWLTKDNSDTDGIPVLNKDLTHEIDLGITGNELIVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00449522;
- 90% Identity
- iTF_00449522;
- 80% Identity
- -