Fyps002508.1
Basic Information
- Insect
- Fissipunctia ypsillon
- Gene Symbol
- -
- Assembly
- GCA_947568875.1
- Location
- OX387658.1:9494661-9495212[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-11 3.6e-09 37.0 0.0 3 39 16 52 14 56 0.90
Sequence Information
- Coding Sequence
- ATGGCCGGCGTCAACTCGAAAACAAAGCGTAAAGAATTGAATTCAGAGCATATGGCGGAAGCTATAAAATTAGTAAGAGAGAAAAAAATGGGTTATTTGAGAGCTGCAAAACACTTTGATGTGCCAAGATCTACCTTGTTTCGATTATGTCAGAAAAACGAATTTTCTCCAGAAGAAGCCGCAGATACTACACTCGGAAGGAAAACTGTCTTAGGGACAACCCTTGAAAATCTTTTGGAAGACTACATTTTGACGATGGAGAGCAAATTTCATGGCTTGACGAGAAATGATGTTCGAAGAATGGCGTACATGTTACCAAATCGTAATCAGTTGAAAAACCCATTTGGTGAGACTGGCATGGCTGGAAAAAAATGGCTTAAATTATTTCTTAAACGCCATAAGGACAAGCTATCAGTGAGAAGACCAACTGGCACGTCTTTTGCTAGAGCCTTTGGATTCAGCAAAGAAAAAGTAGACTCATTCTTTGATCTCCTCGAAGACGTCTATGCTCAAGGAAACTATGGTCCAAGTCGCATATATAATGttttgtaa
- Protein Sequence
- MAGVNSKTKRKELNSEHMAEAIKLVREKKMGYLRAAKHFDVPRSTLFRLCQKNEFSPEEAADTTLGRKTVLGTTLENLLEDYILTMESKFHGLTRNDVRRMAYMLPNRNQLKNPFGETGMAGKKWLKLFLKRHKDKLSVRRPTGTSFARAFGFSKEKVDSFFDLLEDVYAQGNYGPSRIYNVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00443910; iTF_00443959; iTF_00443973; iTF_00443976; iTF_00443981; iTF_00443894; iTF_00443995; iTF_00276263; iTF_00443980; iTF_00443943; iTF_00443913; iTF_01317234; iTF_00187101; iTF_00931156; iTF_00726235; iTF_00726236; iTF_00726237; iTF_00726238; iTF_00726239; iTF_00726248; iTF_00819995;
- 90% Identity
- iTF_00443894;
- 80% Identity
- -