Fvir018475.1
Basic Information
- Insect
- Ferrisia virgata
- Gene Symbol
- -
- Assembly
- GCA_900060175.1
- Location
- FIZR01000841.1:7181-10579[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0044 0.4 11.4 5.1 3 23 289 310 288 310 0.92 2 10 0.0013 0.12 13.1 4.7 3 23 369 390 368 390 0.95 3 10 0.27 24 5.8 2.4 1 23 678 701 678 701 0.96 4 10 0.059 5.3 7.9 0.5 2 23 742 764 741 764 0.94 5 10 0.00028 0.025 15.2 0.4 3 20 797 814 796 815 0.95 6 10 0.31 28 5.6 6.5 3 23 850 871 849 871 0.96 7 10 0.07 6.3 7.6 5.4 2 23 885 907 884 907 0.95 8 10 0.00048 0.044 14.4 0.5 3 23 959 980 957 980 0.92 9 10 0.71 64 4.4 2.6 1 23 1040 1062 1040 1062 0.98 10 10 0.041 3.7 8.4 2.5 1 23 1070 1092 1070 1093 0.95
Sequence Information
- Coding Sequence
- atgtcaacgtTATTTTCGGTGACGCCGAACGACGACGTACGCAACGCCTCCGTACAAAACACCGCCGTCTGCCTATCTCTATCCAGAAAGCATTTACCATTTGACGAACGCGAACGCATTAAAAAACGCCGCAAACAGCTAAACCCAGTTCGACTCTCATTGGATTACGTCCGTTCGGAAGACTCGATTAATGATAAAGATGACAACGCTTCCAGTACAGATTCATCGTCTGAGAAACATatcacgtacacgtacactcCCACCTCGTCCACCGCCACCGCCATCGAACCGTCTAACCGAGTTAATTTCACCGATTGCGAAGATATAACGACGAGCTCCGATGATCCGGCCTTGGAATCCATCTCCGTACCGTTAAACTTGACGAAAAACTCTCGAGTCGAAAGTTTCGTTAATTCGATCTCGTTATTGCCGGAAACTGCTGCGATAAccgcgacgacgacgacgacgacgacaacaacatcGTCTGCAAAAACTACCAAATCAACAGATGGTTATAATTGTAGTAGACTGGTCGAAGAtgttaaacaaaatttatacacgGCTCGTAAAGACGATAATCTATCTTCCAAATATACAATTTGCAATAcgtcgatgaaaaatcaccaaattGCAGAATCGAACGAGTCTTCTTCGCCGAATTACGAACATTTTCTAGTCGGTAACGTTGCATTTCACGACGATAAACTTCAACAATCGtcccaacaacaacaacaatcaaCACCGCATAATAAAGACCAATCTCCGCCATTTTCGCCCCGAACGCCGCCCGTATCTGTGATGCGTAGTTTATTTACGAACGCTGTGACACGTACTTCTTGCCGAATCTTCAATCCGGAAGCATTTTGTAACATATGCAACAAAGAGTTCTGCAATAAATACTTCCTGAAGACGCATAAAGCCAATAAACACGGCGTTTATTGCGAAACAAAAGATAGTAATTCGCCGGCCGCAACTGATGCCAACGAAACGTTATCCACTCCGGTACCTTTAATGTTTACGTGGaacgtgaaaaataacaacGTTAAATTACCATCGAATCCGTACCTGATAAACGCGAACGCTGTCAAAGATTCGTCGgcattttgtaatatttgcGAAAAAGAATTCTGCAACAAGTACTTCCTGCGTAGGCATAAGGAAAAAATGCACGGTATTGTGTCCTATAACGACGGTCGTAAATCGGATACCAGCTCCGATTCCGATATTAAAACTGGCAAAgagaacgacgacgacgatcgCGATGTAAGAATGATGTcgatgacgacgacgtcgacTACTACgataacgacgacgacgacaacaacaacgccATCGAATCAGTTCGACGATTTGAAATCGTACCCGAAGACCAACATTTATCAAGATGTGAAATCTAAAAACGAGCttaaccaaaatttgaaatacgaattggtgaaaaatctgaaagaagCAGCCGCTGCTAAACTCAAGTATCCGAAATATTCTACTAATATGGCTACCTCGGATGCTGTTTcggatttcttgaaaatctgcCTGACCAATACGGCGGTCGCCAATAAGACGTGTTCGTCGGTATCGTCGGATCGATTCGTTATCAAAGACAATAACAgtagtaaaaatatatatccgGCTGAGGTACTAGTCGTCGACGACTTTCGAGAGTACTCGAAAAACCTTTCTAAAGACTGCAGCGATAACAGTATAGTgaatttgataattaaaaaggAAGACAAACCAGTCTCCGAATTCAACTGCCAGCCGCCAAACATATCTTTATCGTCGACAGTCGCAGCAGCACTATCGGCAACCGGAGGCGATTACGATGCTAGAGCGAAAACAttatcgtcgtcttcgtcgtcgtcgtcgtcgccttTAAAATGCCTCGTTTCTACGGGCGAATTCGGTGTCCAAGCGAAAGAAGAAGATTTTCACGACGTACACGACAGACACGGTTCGAAGACGAACGCCATCGTCGACGAATACCATCGATCGTCGCCGTCGTGCACCGAAGACGAGCCGGATACTAAAAAATACGTTTGCGAATTATGCTCGAAAAAGCTATCCACGTTTTCGATACTAAAACTGCACCATAAATACGTGCACGCTATGAACGTCGAAGatacaataaaaatcgaaGGATGTATCGAAGAAGCCGAATTCAAGAAAATGGAAAacgtttattttatgattttgaaattcagcCTGCTCAATACGGTCGTAACGTATTGCGAATTATGCAAAACGGAATTCGATAAGAACGACGTGCTCGAGATGCATCTGATGAATAAGCACGGCGCGTTGGTCGACGAAATCAGCCGCATTATCGAAGATGCCGGAGTGAACGGTATGCTGGTGCCGGCCATGAACATAGGCGATGGTAATCTGCTGTGTCAAATTTGCAACAAGACTTTCACAACCAATGCCTCGTTCCAACAACACGTGTACGAGAAATGCGGTCCGGCTCCGGATTTCAAAGACTATTCCGAGTACTTTCCTAGTCTGTCGCTGGACGATACCGTTTGCGACTCTTCCAAAACGAGGAATTTTTGCGAAATCTGTAAAAAAGAACTATGCAACAAATACTTCATGAAAACGCACATGCACCGTATGCACGGCATATCGCTCCAAAATGGCGTACGTATCGGTGGCGTTACCTGTGAAATATGTAACAAAGAGCTATGCAGCAAGTATTTCCTACGGGTGCATAAAAAAAACTGCCACGGTATTATGGAAACCGCAGCTACCACCAATACCACCTCGACAGCTTCGCCGTTCGCAACCAATAGAACGATTTTAGCTCAacaacaccaccaccaccacaatGAATTCGATAAAGACGATTATCTAGCTCAAAAACAACACGTTTCGCAGATCTGCTCGATATGCGgacgtattttcaaaagtatgaAATGGCTGAAAACTCATCTGTTCAACGATCACGGTAAAATTGGCGCCAACAGATGGCAAGATATACTCAATAGTTTTAACAACGTGGAGCACGAATCATCGACGGTAAGTTCGGCTGGCACTGACGATCCTGAGTATACCAGCCAATCATCGTATCCGGAAATGGATGATAAACCGACGGccacgacgacgacaacagcAACGCAGTTATACCAGTGCTCCTGTTGCCAGTTTCAAACTTCCAACGTCGAGTTACTAATTACCCATCAAAGACTGCATCTGAAAGCAGGTGAGTTGCAGTATCGCTGTATGTACTGCTTCGTTTTTACCAAAGATAAAAATTCCCTAGAAGAACATATCGCCTATCATCATTTCACCACTAACACCACCGCCGGTAGTAATGCGACCGAGTTTCACGATTCGTCGCCTTTTGATTTAGCTATAACAAATGGTAACTGTGCCAGAGTGATAGATTACGACAGAAGTAATTGA
- Protein Sequence
- MSTLFSVTPNDDVRNASVQNTAVCLSLSRKHLPFDERERIKKRRKQLNPVRLSLDYVRSEDSINDKDDNASSTDSSSEKHITYTYTPTSSTATAIEPSNRVNFTDCEDITTSSDDPALESISVPLNLTKNSRVESFVNSISLLPETAAITATTTTTTTTTSSAKTTKSTDGYNCSRLVEDVKQNLYTARKDDNLSSKYTICNTSMKNHQIAESNESSSPNYEHFLVGNVAFHDDKLQQSSQQQQQSTPHNKDQSPPFSPRTPPVSVMRSLFTNAVTRTSCRIFNPEAFCNICNKEFCNKYFLKTHKANKHGVYCETKDSNSPAATDANETLSTPVPLMFTWNVKNNNVKLPSNPYLINANAVKDSSAFCNICEKEFCNKYFLRRHKEKMHGIVSYNDGRKSDTSSDSDIKTGKENDDDDRDVRMMSMTTTSTTTITTTTTTTTPSNQFDDLKSYPKTNIYQDVKSKNELNQNLKYELVKNLKEAAAAKLKYPKYSTNMATSDAVSDFLKICLTNTAVANKTCSSVSSDRFVIKDNNSSKNIYPAEVLVVDDFREYSKNLSKDCSDNSIVNLIIKKEDKPVSEFNCQPPNISLSSTVAAALSATGGDYDARAKTLSSSSSSSSSPLKCLVSTGEFGVQAKEEDFHDVHDRHGSKTNAIVDEYHRSSPSCTEDEPDTKKYVCELCSKKLSTFSILKLHHKYVHAMNVEDTIKIEGCIEEAEFKKMENVYFMILKFSLLNTVVTYCELCKTEFDKNDVLEMHLMNKHGALVDEISRIIEDAGVNGMLVPAMNIGDGNLLCQICNKTFTTNASFQQHVYEKCGPAPDFKDYSEYFPSLSLDDTVCDSSKTRNFCEICKKELCNKYFMKTHMHRMHGISLQNGVRIGGVTCEICNKELCSKYFLRVHKKNCHGIMETAATTNTTSTASPFATNRTILAQQHHHHHNEFDKDDYLAQKQHVSQICSICGRIFKSMKWLKTHLFNDHGKIGANRWQDILNSFNNVEHESSTVSSAGTDDPEYTSQSSYPEMDDKPTATTTTTATQLYQCSCCQFQTSNVELLITHQRLHLKAGELQYRCMYCFVFTKDKNSLEEHIAYHHFTTNTTAGSNATEFHDSSPFDLAITNGNCARVIDYDRSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -