Basic Information

Insect: Ferrisia virgata
Gene Symbol: PRDM1
Assembly: GCA_900060175.1
Location: FIZR01008293.1:370-5785[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.1e-06 0.0001 22.7 0.7 1 23 566 588 566 588 0.99

2 5 9.9e-06 0.00089 19.7 5.6 1 23 594 616 594 616 0.98

3 5 1.9e-05 0.0017 18.8 7.7 1 23 622 644 622 644 0.98

4 5 0.0012 0.11 13.2 3.8 1 23 650 672 650 672 0.97

5 5 0.02 1.8 9.3 0.2 1 17 678 694 678 694 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.1e-06	0.0001	22.7	0.7	1	23	566	588	566	588	0.99
2	5	9.9e-06	0.00089	19.7	5.6	1	23	594	616	594	616	0.98
3	5	1.9e-05	0.0017	18.8	7.7	1	23	622	644	622	644	0.98
4	5	0.0012	0.11	13.2	3.8	1	23	650	672	650	672	0.97
5	5	0.02	1.8	9.3	0.2	1	17	678	694	678	694	0.92

Sequence Information

Coding Sequence: ATGCGCCTGAATCGAGGCGAGCCGGAGAGCGACGCTTTGAATATGATGAACGtgaaagaagaagaatttgaaaaattagtcaatTACATAGCTCCAGATTTACCAACCAATCCAAATTGTCCTAacaaagctgaaaattcgttACCTAGAAATTTAGAACTCAGACCTTCGAGAGCTATTACCGATGCTTTGGGTGTTTGGAGTACAGCAATTATCCCACGAGGTACTCGCTTCGGTCCACTAGTTGGTGAACTTCACTCAAAAGATGCCGTCCTAACGAACGTGAAtaggaaatatttttggagggtttacAAAGATAACGAATTGTATTACTATATTGATGGTTACGATGTATCTAAATCAAACTGGATGAGATATGTGAATCCGGCCTACTCATCGGAAGCACAAAATCTAATAGCATACCAATacgagtcgaacatatatttttacacTATTAGAACAATTCCTAAAGATGAAGAATTATTGGTGTGGTATTGCAAAGAATTTGCTGAAAGACTGAAATATCCGTTGACCGGAGAACTGATGCTGCAACAGATAAGAAGGCAAACAATAAACATGCAACCACAAACAATAGTCAGTCCACCGGTGCAAGTACCAGTACAAGTACCAGTACAGACGTGCAGATCGCCTCGTACCGAGTATGCACCTCCGGTTGCACAAACAACATTGGAAGTGGCCGAAGAGACCAAAGATATAGAAAGGTTACCTGTTGTACAAAGCGGAGAATTAGTAACATCGAAAGATTGTCAAAACGGATACGATCAACTGAATTCGGTTCGTTCGGACGAAGGTTACCATAGTCATGGATTTCATGATGAATCATTAACACCACCGTATGGATGCGTTGATTCAGACGACAgtgataattatattttagatttcagTAAAAAACAAGCTCGACCTAGTGAAACAGAAGATCACGAAGGAACTGCTATGGAAACCGACGAGCAAGTACTAGATCGAAACGAAtacagaaaagtaaaaataaaaatgtcaaaggCTTCGTCCTACTGCACAAACCGCACAACAACGCATTTAACTAAAGAAATTTCGCCGgagaataaagaaaataattcgcCGCAAGTGATCACCGTAGTACCGCATCCTAAAACTAGCGTTGAAGAAGATATGACGAATTTACGACTTCAGTCGCAATCGCCACCATTGTCACCAACCGAAAAAGCGTACTCGTACAAGAAATCGCAAAGGTACGGTTGTGCACCGGTTAGCCCGGATTCAACGGCACAGCCGGATTCACATTGTTCGTTATCTCCAAATACGATTACACTTGTTCCTAAACTATCTCCACCGCCTTCACCACCGTACCAACCAGAAGAACCTTCTTATCAGCCACATTCCCCGCAAGTTATATACACTTCGTACCAAATAAACGTACAACAAAACGTCGTTCAACCACCGACTTCGTATTCGCCACCTACGTCGTCCAATATGCAGTACCAATATCCACCCCCTTCGTTTGGTATCAATTTGTCGACGCCGTTACACCACATTTTAACTCCTGTACCACCTGTTCATCATCCGTTACCTTCTCAACATTCCTGTTCGTCGCCGGGATCTATGTCGCCGGATGAAGGACCTTGTCATAGTCCGACCAACTCCAGAGGATATAAATCGCTACCGTATccgttgaagaaaaaagatgGCAAAATTAATTACGAATGCAATATTTGTATGAAAACCTTTGGTCAACTGTCCAATTTAAAAGTGCATTTAAGAACACATTCGGGCGAACGACCTTTTCAATgtaatacttgctcaaaaaccTTCACTCAGTTGGCCCACCTGCAGAAACATCATTTAGTTCACACAGGTGAGAAACCACATCAGTGTGATACTTGCCATAAACGATTCAGCTCTACTTCAAATCTGAAAACACACCGAAGACTTCACTCGGGCCAAAAACCTTTTGCGTGTGATTTATGTCATGCGAAATTTACTCAATTAGTCCATTTGAAATTGCATAAGAGGTTACATACGAATGAAAGACCGTACATATGCACTACATGCGGGAAGAAATACATTAGTCATAGTGGATTGAGGTAA
Protein Sequence: MRLNRGEPESDALNMMNVKEEEFEKLVNYIAPDLPTNPNCPNKAENSLPRNLELRPSRAITDALGVWSTAIIPRGTRFGPLVGELHSKDAVLTNVNRKYFWRVYKDNELYYYIDGYDVSKSNWMRYVNPAYSSEAQNLIAYQYESNIYFYTIRTIPKDEELLVWYCKEFAERLKYPLTGELMLQQIRRQTINMQPQTIVSPPVQVPVQVPVQTCRSPRTEYAPPVAQTTLEVAEETKDIERLPVVQSGELVTSKDCQNGYDQLNSVRSDEGYHSHGFHDESLTPPYGCVDSDDSDNYILDFSKKQARPSETEDHEGTAMETDEQVLDRNEYRKVKIKMSKASSYCTNRTTTHLTKEISPENKENNSPQVITVVPHPKTSVEEDMTNLRLQSQSPPLSPTEKAYSYKKSQRYGCAPVSPDSTAQPDSHCSLSPNTITLVPKLSPPPSPPYQPEEPSYQPHSPQVIYTSYQINVQQNVVQPPTSYSPPTSSNMQYQYPPPSFGINLSTPLHHILTPVPPVHHPLPSQHSCSSPGSMSPDEGPCHSPTNSRGYKSLPYPLKKKDGKINYECNICMKTFGQLSNLKVHLRTHSGERPFQCNTCSKTFTQLAHLQKHHLVHTGEKPHQCDTCHKRFSSTSNLKTHRRLHSGQKPFACDLCHAKFTQLVHLKLHKRLHTNERPYICTTCGKKYISHSGLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01262891;
90% Identity: iTF_01472701;
80% Identity: -