Fvir002509.1
Basic Information
- Insect
- Ferrisia virgata
- Gene Symbol
- HIVEP1
- Assembly
- GCA_900060175.1
- Location
- FIZR01032182.1:8883-12036[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.1 4.7e+02 1.7 0.7 1 19 233 251 233 254 0.93 2 13 0.00048 0.043 14.4 1.0 1 23 309 331 309 331 0.95 3 13 0.54 49 4.8 0.6 2 23 336 358 336 358 0.93 4 13 0.46 41 5.0 0.9 2 23 381 399 380 399 0.85 5 13 2.2 2e+02 2.9 1.4 1 20 419 438 419 441 0.72 6 13 0.35 31 5.4 0.1 2 23 448 469 447 469 0.96 7 13 0.00046 0.041 14.5 1.1 1 23 475 497 475 497 0.96 8 13 0.0001 0.0094 16.5 1.0 1 23 503 526 503 526 0.93 9 13 0.00051 0.046 14.3 1.7 1 21 530 550 530 551 0.95 10 13 1 91 4.0 4.1 2 23 602 623 601 623 0.96 11 13 1.9e-06 0.00017 22.0 1.5 1 23 629 651 629 651 0.97 12 13 0.095 8.6 7.2 2.5 1 23 657 679 657 679 0.89 13 13 3.9e-08 3.5e-06 27.3 1.5 1 23 685 707 685 707 0.99
Sequence Information
- Coding Sequence
- ATGAAATACGAAGAGATGAACGCGTCAGCGGTGCGTAATAGCTGCCACGACGACGGTGTTGTTCGAGACGACGAACGCGAATGTAACGCCGTGGTCGATGATTTCATCGAGCTGTTGGTCGTTCATCCGGAAGAAATGGTTGAAGTGGATGTGAACGGCGTGCTACTCGAACAACAACCTCAACGACTGCAGCCGCaaccacaacaacaacaacaaccaccaccaccaccacaacGACAACAAAGGCTGCAAAGTAAACTGATAGGCGACGATATGGTTGCGGTGGTAGACGAAGTAGCGCGGTCGCGGTTGCCGCCGGCGTCGCTGTCGCTGTCAGCGGAGTATTCGACGTCGACCCGCTCGAAAGAGGAAcgacgagaagaaaaaaagcaaaaacaagAGACCGACGATGTGACGTTAATGGAAAGCTTGGGAAACGTAGTATCTCCGGCGGGTTTGCGAATACGGCCAAGCCCAGCGCAAACGCAAACCCTGTTGGTAATCGGTAGTAAAAGCTACAACGACGATAGCGGCGACGTCGTATTCGCTGCCATCAAAGACGAGCCTAAAGAAATGCTCTTCTGCGACGATTACGACGATGAAATTCTCGAATTGCAAGAAGAACAGCAGGTTACGTGGGTGTACGACGATGCGCTTAAAGATAAAGCTATCTGCGAAGAAGAATGCGATGTAGTTTACAAATGCGGCTCGTGCGCCAATACTTACGAAAACGAAGCTCTGTTTCAATCTCATAATTGCGTCGGCGAGTACGAGGGTGACGAAATCGTGGTTCAAATGCGTGGCGGCAGCGGCGGCGACGATGACGAGGGCATATGCGATGACGACGGcagcggcggcggcggcggcggtggCGGTGGCGGTGATAACGTTGTCGTCGACGACATCAACAAAGGTAGAAACGTTTTTCAGTGCGACATATGCGACCGCGTTTTCAAGTCCAAGTTGGTGTTCAAGTTGCATTACGCGCAGCATAAAAAGTCCAACGTCTGCCAACTGTGTAACGCGTGCTTTTTGGACGGCCAAGACCTGCAGACGCATTTGAATCAAGCTCATTCGGGCGTTAACTGCGATTCGGAAGATAGCGCTATGTACGAAGAAGCGTTAGCCGACTCGGAAAAACAATGCGACGTTTGCGGCAAAATTACCGATAATTTGAAACAACACAAGCTGTATCACGCCGTTAAAGAGCTCGAATATTGTAAGgcggaaaataaaaaatttctcaagaaaTGGTTCTACTGCCAGaaatgtaataaaaaaattttctccgaaGCGAATTATCTGTTTCACGTGGCGAAGCACAACGGAGAAGACACAGTCAGCTGCAGACAATGCAACTACGTGGCGGTCAACATTCAAGATTATAATATGCATATTACGACGCATACCGGCGGCAAGTATTTCATTTGCAACGACTGCGAAAAATGCTTCTTCACCAGGTCGGCGATATCGGATCACGTGCTCATCCATATGGACGGTACGCGCTACATGTGCGAGATTTGCGGCAAACGTTTCAAAACGTCCAGATCGAACGCGCAGCACAAGTTGCTACAGCACAAGAAGTACTTCCGCTGTAATCGTTGCAATCGCGGCTTCACGCACGAAGCCAAGCTGAAAAGTCACTACAACATATGTCGCGTCATCAACCAAGAGCAGAAAGAGTCCAAGGTGTTCGAGCCGGTGGAAAAATTCTTCTGTAACATTTGCAATTCCAACATAAAAAGTTCGTCCGAAATATCCATACTGTTTCACAAAGCCAAACACGAAGGTAAAGACGGCGTCGAGTGTAAGTTCTGTAATTTACTGTGCAAAAACGCCTgcatgtacaaaaatcatctGCTCATACATACGAACCAGCGTCCGTACGCGTGCACGCAATGCCCGAAAAGCTTTCGCACCAAGGGCTGCCTGGTGCAGCACATGCTGGTGCACGGCGACGAATACAAATACACGTGCGAATATTGcggcaaaaaatcgaaaaaactcACCACGCACGTCAACCACGTCAACATACACACCGGCACGAAACCGTACAAGTGTCCGGACTGCGATCGCCCTTTCCGCCAGCTCAGCGACATGAAGAAACATCGCCGAACGCATTTGAAATACAAATCAGAGCCGAGCGCCGCGGCGGCGGCAGCTGcagccgccgccgccgccgcttCGGTCACCGTCACCACCGAACTACCTTATTTGACTATTAAGACCGAAGTCGAAGACATGATCGCAGCCGAAAGTATACAACAACTTCAGTTGGCCTGA
- Protein Sequence
- MKYEEMNASAVRNSCHDDGVVRDDERECNAVVDDFIELLVVHPEEMVEVDVNGVLLEQQPQRLQPQPQQQQQPPPPPQRQQRLQSKLIGDDMVAVVDEVARSRLPPASLSLSAEYSTSTRSKEERREEKKQKQETDDVTLMESLGNVVSPAGLRIRPSPAQTQTLLVIGSKSYNDDSGDVVFAAIKDEPKEMLFCDDYDDEILELQEEQQVTWVYDDALKDKAICEEECDVVYKCGSCANTYENEALFQSHNCVGEYEGDEIVVQMRGGSGGDDDEGICDDDGSGGGGGGGGGGDNVVVDDINKGRNVFQCDICDRVFKSKLVFKLHYAQHKKSNVCQLCNACFLDGQDLQTHLNQAHSGVNCDSEDSAMYEEALADSEKQCDVCGKITDNLKQHKLYHAVKELEYCKAENKKFLKKWFYCQKCNKKIFSEANYLFHVAKHNGEDTVSCRQCNYVAVNIQDYNMHITTHTGGKYFICNDCEKCFFTRSAISDHVLIHMDGTRYMCEICGKRFKTSRSNAQHKLLQHKKYFRCNRCNRGFTHEAKLKSHYNICRVINQEQKESKVFEPVEKFFCNICNSNIKSSSEISILFHKAKHEGKDGVECKFCNLLCKNACMYKNHLLIHTNQRPYACTQCPKSFRTKGCLVQHMLVHGDEYKYTCEYCGKKSKKLTTHVNHVNIHTGTKPYKCPDCDRPFRQLSDMKKHRRTHLKYKSEPSAAAAAAAAAAAAASVTVTTELPYLTIKTEVEDMIAAESIQQLQLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -