Fvir008698.1
Basic Information
- Insect
- Ferrisia virgata
- Gene Symbol
- Hivep1
- Assembly
- GCA_900060175.1
- Location
- FIZR01002260.1:1-18297[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00021 0.019 15.5 1.2 2 23 251 272 250 272 0.96 2 7 0.015 1.3 9.7 2.9 1 21 278 298 278 303 0.88 3 7 0.0011 0.1 13.3 0.7 1 21 712 732 712 733 0.94 4 7 1e-05 0.00091 19.7 2.6 1 23 1354 1376 1354 1376 0.99 5 7 4.9e-05 0.0045 17.5 4.0 1 23 1382 1406 1382 1406 0.92 6 7 1.3e-05 0.0012 19.4 0.6 2 23 1711 1732 1710 1732 0.97 7 7 0.0014 0.12 13.0 0.8 1 20 1738 1757 1738 1762 0.91
Sequence Information
- Coding Sequence
- ATGCGAGTATTAATGACGAGCTTGTTATCTGTTACaggaattaaaattgaaaccgaGCCggaaaacgatgaaaatgaacCGAACGACGGTAAATCGGAAAATACCAGAATTGATACTCAAAAgtcaaacaatgaaaattGCACGCTACTGGACCAAGCACCGACCAACACGCCGGATAATATTTCCAATTCGTTGGCGAACGCTACAACCAACGGTAGCAACAAGTATTTGcataagaaattcaaaaagatgGTGGCAATCTTGTCGGACGACAGCGCATCACCACCGGCATCCGCTATCGACCAATCAAATCGAGTGGTCGTTACGATGGCAatggcgacgacgacgacgacgaccaccGCGTCATCTTCTCTAGTAAAAGATTCGGCGGCTTTTCTTAATAATTCGACACCATGCGCAGTTACAACATCGCCTACGATCGTCACCGGTTGCTTTGCTACGACCaccgaaaatcatcaaaatcacCACCACCAGCAGCAACGCCCATCATCGATCAACAATGTAGCATCGTCGATCAGTACGACAACCTCAATCACATCATCAATGCAATCTAGTCTTCCAAAATGCGCGACAACGACGCCACGTACGGCGCCACCGGCGTCCATCACGGACGCGTCTTCGAATAGTGGACTAAACCGAGAATGTAATTCGACTAGTCCTTATAAATGCTCGTCGACCGGCTCGGCTAATTCGGAAGACGATAGCGTTACGACGGTGGCGGCCAAATGCGTTTGTCCGTATTGCGATTTGGTATGCAGTAAACCTAGCGTTTTAGAGAAACATTTGCGAGCGCATACGAACGAACGACCGTATCCTTGTCTTCCTTGCGGATTTTCTTTCAAGACGCGTAGCAATTTGTTGAAACATTGTCGGACATCTAGATCACATTCGTTAAAGTTGGAAGAAGTTGGCGGCGAGAATAACGTTTCGTCGATGATGTCGAAGACCTCCGAAGATGATGGCGAAGAGGCCGACGAATACGCTCAGGTATCGACGACTGCTTCCGCCGTCAACTACTCGTCGTCTTGTTCGTCGATAGCCTCGATAAAGGACGAATCTTGCAGCAGTAACGACGAAAACAAAGCTACCGATAATGTGCCTCGAACGACTATCTATAAACCTAAATTCCATAAGGCGGCCATTTACATACAGAACAACAACACCGGCAGCAACGCTACCGCACCAACGGTTACAACTTCGTCTGCGTGTAGCGCGGCTACCGTTGTTGGCGAAATTTCGACAATGAACAAGCTGGGATTGCAGTTGAAGATACCGGTTGCTTCAGCCGTTGCGAATACGACGGCAACGGTCGGTGTCGGCGCGATTCAAAATTCTTCGGCTTCGTCGACGCCATCGACGCCTTCGCCGTTCACCAGCGGTTCGTCGCCCAGTCCAGAATTTCTTCATAGACACATTAGTAAATTAATCagcgaaaatcaggctatcgTCGAAACAACCGATCCGTTTTGGTCGAAGAAATTCTACCAAAGGAGTAAAGAAGGGTCGCCGTCGAGTCCGTTATCTTCCTCGTCTTCCTCTAGTTTAGATTCGTCGTTTAAGAAGATACCAGCTGCCAACGCTAACGGCGTTAAATCGCTAGCGCCGACATCGTCGACGGCGCCCGAATCCTCGATCGAGGATAAGCTGCCGGTCGAGTCGAAACTGGCGCACGCTTTACTCCAACCCAGAGTGGCCAAAGCGAACGCTGTGGCGGCCACTAACGAAACTATGGTTGTTGGTGCTTCGGCCGGTGGATCTTGCGGCTCGATGGTGGTCGAAGATGCGCAGCCGTTGAATTTATCCATATGCAAAGATACCAGAACGAAGAGTTACCTTGACGAAGAGGATGATAAGACTGTCGCGATGGCCGCACCGCCGCCGGTCGCCTCCGAGTATCGTTTGATGATCGGCAACGAAGCACCGCCGCTGATACCGAGGTTTGTGCCGAATGGCCGAATATCGTCGGCATCGGCGTCCATCGATGGCTACGTCGCCAACGACGCACATCGCGGGTACGTGAAAATGGCGGCGCCGGTGCCCGATGGTTTGGTCGGCGTTTCGACGGCGGCCACCGCCGtagttaaaaataatactaaattatcaataattgaACACATGTGTTCACTGTGCGACGAAACTTTCGATAATTACGATAAGCTAAAGACTCATATATTGTACCAATGCAAAGGCAACAAGAATCATAGTTTCAGTAAATCGACAAACGGCGCCGGAAACGATGCCAGACTATTCTTGAGACTATCGGCCGAAACGCCTCTCAGCGGCACGTCGTCTTCGTTGCAACAACAACAGGCGAAAGCTCCGAATGCGAATCAATCGCCTGGTCCGCGATTAGGTAATACGCCTTTGGTGggcaattacaaaaaattatcggtAATAATGTCGGGTGGTGGAGGTAGCAGTGGCGGTTCAAGCACGTTGTTGGATAAATCTATGTTGACGACGGCCACTACAACCACAAAGAACAACCATCATAACCATATATTGGTCGAGCAGCATAAAAGCGTGACTAGTTTGAAATCGCTCGAGGAGCTGTCGAACGCGCCGATGAAAGGAGCTAATCACTATGTATACAACGCGGCTTTGATGGTAGACGAGGCCGATAAAAGCTCGTTAAAAGTGGCCACAGTCGCGGACAGCAAAGAAGACCTGCTAAAAGCGTCAATTAGCGGAATTTCGAAGACTGCTTCAATCGCCATCGATGACCAAAAACCGATCTCTATTAAATGCGCATCGACTTCGGCTACCATGGCGGCCGGCCTCGTGTCCAAGTCGAAGGATTCGCAGGTCGTGTTCAAATCGAATTCCGATCTTGCCACTTTGACTAAAATTCCCTCGACGGCTACCAACGCTACTAAAATAAGCCAATTCGTAATACCCGTCGTACAAGGCGTTCCAAATCTTGCCACCATACAAGGCGTACCGGCCGCAGCTTTGTTAGCAGCCACCACCAATTCCAATGTCGATATGCACGCGTTATCTCCGCTGGGCCAAGCGTATAAAACGCCTACAACTCCAACGGCCACCATACCCAAGTCTAAATCAACTCATGTCAACGGTGGCGTTGTTACCATCTTGCACGGAGGCAAAGTGATACCCTATGTTCCAGGTATGCCCGGACCTCAGTCCGTTGGTCCGGCTACCGCAGGCGCCGGTGTTTTTGCGCAAGTCGACGGATACGAAAAGAAGACCTCGGAAGCGGTGAAAAGAAAGTATGACGATGGTGGACCAGTTAATGGAATGATTAAGCATGCCAATCATCAACGAGTTGACGAATTGTCCGGAGCTAATACTCATCAAGCTGCCAAATTAATGCACAGCGTAAAAATTAAGGAAGAAATTGGTGGCTCTAGCATTTACGCGGACCAAGAGAAAGACACGAACGGCGCGAAATTCGCTCGACCTTCGTCGTTACCATTGAAGCCGGGCACATTCATACCGAAAAAACTGCAACCCGGCACATCGTCGATTCTACCTCTTATCAGTCCGGAAACTCCTCGTCCGAATAAATCCTACGGTCAGCTGTACATCGGCGGTAACGCTTACACTTATCTGGGCTTGAAATGTTCCACTCGCAGTACTTTCTGCACACTTCATAAATCGCAGCCGACTTACGTGCCGCTCAGTCCGGAGCATAACAAGGTGTCCATGTATTCCAATTGGAAAATACGATCGGACGTCGATCCTTATCTACGCGGCGTTCCTCCTACGAAAGCGATGTCTTGTTATGATTCACGTCAGAGATATTCCTCGTATACGGTCGTCCATACGAAGATGAAAGATGCAGTCACCCATTCGTCGTATTGGTTCAATAGATCGAAAAGTCACGCCAACAATGATCAGGATACCGGTGTCAATAAGCAGTGTGTCGATAATGATAATAAAGACAATATTCAGGTACAGTTACAAAGCGAAAATCACGCGAGAAACGAAGATggctcgaaaaataataaattcctCGTCGGCGGCATCGAATCGACGGATGATTATACGTATATTAGAGGACAAGGACGAGGAAAATACGTTTGTCTGAAATGTGGTATTCGATGCAAAAAACCTTCCATGCTGAAGAAACATATTAGAACGCATACGGACGTCCGTCCTTATATTTGTAAACATTGCGTATTTAGATTCAAAACCAAAGGTAACCTAACGAAACATATGAAATCTAAGGCTCATTACAAGAAATGTATGGAATTGGGAATCATACCTGTACCGACGGTCGTTGATGATTCGTACGTGGACGAAGAAATACTTTCGAAacaaacgCAACAAATAGAAGAAGGTCAAGATATAGAGGAAACTGAAGAAGaagatgatgacgacgatgaagacgatgacgaagaaaaCGACGATGATTTTATCGAAGATAAAGAAACTGcCGAAGACCCAAAATGTCAACTAGAAAGAGAAGTAGCTCGATCGTTACTATCGTTATCAAAAATGTCCCATCAAACGGTTTCCGAACAATACGCGAATGCCGGATTAGTGCCATTGAACGCCAGACCCAACACGTATCCGTATAATTTCTCGGCGAATCCGCACCTTTCATCGAAACCTCATACACCAACTTTGACCCTAATCAGCGAACAGAAAGAACAAGAAAAGgtaTCCAAAAATACGGGCTTAGCCAGAGAACTGCAACCGATAGTTACCTCAAACGCGGTAATAAAACCGAAAAACGAATCGCAGCATACCAACGAAAGATACTACTTCGGATCGGCTACCGTTGATAAAGATCATCTAGCCATGGAAACGAATGACATCCTGGTACCGGAACTCGTGCTGAAAGAATCATCATCTGTGGTCGGCGCTAAGAATTCGTTCGTCGAACGTTGCAGTATTGGCAGTGGTAGCGTTAGCGCTAAAATCGAAACGTTGGTCGATCGTAATAATGATATTGAGTCTAAAGAGAATCTTGTACTGACACCTACGGCCGATGGAGAAAAAGCAGAAAGCTCTACTTCGGTTATTATATCAGTCGGGTCGCCGAATTCCAATTTGAATGCAAGTTCGCCTAAGAAATTGAAAGCCGAATTTATATCACCGTGTAGTGGACCTTTAACGAACGTTTTGGAAGACGGACGTAGTAAATGCGCTATTTGTAATAAAATCTTCAGCAAGCAAAGCCAACTCAGGTTacatgtaaatattcattactTCGAGCAACCGTTCAGATGCGAATCGTGCGCCGTATCGTTTCGTACCAGAAATAATCTTCAGAAACATTTGGGATCAAATTCGCATTTAAATAAA
- Protein Sequence
- MRVLMTSLLSVTGIKIETEPENDENEPNDGKSENTRIDTQKSNNENCTLLDQAPTNTPDNISNSLANATTNGSNKYLHKKFKKMVAILSDDSASPPASAIDQSNRVVVTMAMATTTTTTTASSSLVKDSAAFLNNSTPCAVTTSPTIVTGCFATTTENHQNHHHQQQRPSSINNVASSISTTTSITSSMQSSLPKCATTTPRTAPPASITDASSNSGLNRECNSTSPYKCSSTGSANSEDDSVTTVAAKCVCPYCDLVCSKPSVLEKHLRAHTNERPYPCLPCGFSFKTRSNLLKHCRTSRSHSLKLEEVGGENNVSSMMSKTSEDDGEEADEYAQVSTTASAVNYSSSCSSIASIKDESCSSNDENKATDNVPRTTIYKPKFHKAAIYIQNNNTGSNATAPTVTTSSACSAATVVGEISTMNKLGLQLKIPVASAVANTTATVGVGAIQNSSASSTPSTPSPFTSGSSPSPEFLHRHISKLISENQAIVETTDPFWSKKFYQRSKEGSPSSPLSSSSSSSLDSSFKKIPAANANGVKSLAPTSSTAPESSIEDKLPVESKLAHALLQPRVAKANAVAATNETMVVGASAGGSCGSMVVEDAQPLNLSICKDTRTKSYLDEEDDKTVAMAAPPPVASEYRLMIGNEAPPLIPRFVPNGRISSASASIDGYVANDAHRGYVKMAAPVPDGLVGVSTAATAVVKNNTKLSIIEHMCSLCDETFDNYDKLKTHILYQCKGNKNHSFSKSTNGAGNDARLFLRLSAETPLSGTSSSLQQQQAKAPNANQSPGPRLGNTPLVGNYKKLSVIMSGGGGSSGGSSTLLDKSMLTTATTTTKNNHHNHILVEQHKSVTSLKSLEELSNAPMKGANHYVYNAALMVDEADKSSLKVATVADSKEDLLKASISGISKTASIAIDDQKPISIKCASTSATMAAGLVSKSKDSQVVFKSNSDLATLTKIPSTATNATKISQFVIPVVQGVPNLATIQGVPAAALLAATTNSNVDMHALSPLGQAYKTPTTPTATIPKSKSTHVNGGVVTILHGGKVIPYVPGMPGPQSVGPATAGAGVFAQVDGYEKKTSEAVKRKYDDGGPVNGMIKHANHQRVDELSGANTHQAAKLMHSVKIKEEIGGSSIYADQEKDTNGAKFARPSSLPLKPGTFIPKKLQPGTSSILPLISPETPRPNKSYGQLYIGGNAYTYLGLKCSTRSTFCTLHKSQPTYVPLSPEHNKVSMYSNWKIRSDVDPYLRGVPPTKAMSCYDSRQRYSSYTVVHTKMKDAVTHSSYWFNRSKSHANNDQDTGVNKQCVDNDNKDNIQVQLQSENHARNEDGSKNNKFLVGGIESTDDYTYIRGQGRGKYVCLKCGIRCKKPSMLKKHIRTHTDVRPYICKHCVFRFKTKGNLTKHMKSKAHYKKCMELGIIPVPTVVDDSYVDEEILSKQTQQIEEGQDIEETEEEDDDDDEDDDEENDDDFIEDKETAEDPKCQLEREVARSLLSLSKMSHQTVSEQYANAGLVPLNARPNTYPYNFSANPHLSSKPHTPTLTLISEQKEQEKVSKNTGLARELQPIVTSNAVIKPKNESQHTNERYYFGSATVDKDHLAMETNDILVPELVLKESSSVVGAKNSFVERCSIGSGSVSAKIETLVDRNNDIESKENLVLTPTADGEKAESSTSVIISVGSPNSNLNASSPKKLKAEFISPCSGPLTNVLEDGRSKCAICNKIFSKQSQLRLHVNIHYFEQPFRCESCAVSFRTRNNLQKHLGSNSHLNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -