Fvir000075.1
Basic Information
- Insect
- Ferrisia virgata
- Gene Symbol
- -
- Assembly
- GCA_900060175.1
- Location
- FIZR01021670.1:43117-46838[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.031 2.8 8.7 1.4 2 19 107 124 106 129 0.92 2 15 2.9 2.7e+02 2.5 0.3 1 20 137 156 137 157 0.91 3 15 8.2 7.4e+02 1.1 0.0 9 23 182 196 172 196 0.82 4 15 0.01 0.93 10.2 3.0 1 22 305 326 305 329 0.90 5 15 0.051 4.6 8.1 2.6 3 23 333 353 331 353 0.94 6 15 0.00092 0.083 13.5 1.3 2 23 389 410 388 410 0.95 7 15 7e-05 0.0063 17.1 1.0 1 23 416 438 416 438 0.97 8 15 1.1e-06 9.6e-05 22.8 0.3 1 23 444 466 444 466 0.98 9 15 0.18 16 6.4 0.6 1 20 478 497 478 501 0.81 10 15 0.01 0.94 10.2 4.0 1 23 517 539 517 539 0.99 11 15 0.017 1.5 9.5 1.1 1 23 548 570 548 570 0.97 12 15 0.11 10 6.9 5.9 1 22 597 618 597 621 0.91 13 15 0.00042 0.038 14.6 1.7 2 23 696 717 695 717 0.96 14 15 5.1e-07 4.6e-05 23.8 2.1 1 23 726 748 726 749 0.96 15 15 0.0057 0.52 11.0 0.1 2 20 754 772 753 774 0.91
Sequence Information
- Coding Sequence
- ATGGAAGCTGCTAATAGGAATTCAGCAACCAACAAGACTACGATTAAATTTCGCGAATTATgcgaaatttcgaatttcctTAACACTGGCTTAACTCCTGAGCAATTATATTATTGTtgtaaattaatcgaaaaaggGGTTAATCCGGAAGCTTTAGCACATTCTGTGAAAACCGTTAGAGaagaaGATAAAAATGACGACTCTTTTGACGAAGAAACTGTTCGCGGACGTGGCCGTCCGCTCGGTGCTAGAACCGTAGTAAAATCAGTAAACCTGAAAAAAGTCGctgaaatcgatcaaaaaagaAGTAATCATTTGCAATGCAACATTTGCAATATCCAATTCAACCAGCTTGTTAATTTTGCTAACCATTgcgtgaaaaatcattttaattcgTCGTACTACCAATTTGATTGCGGTTTCTGTTATGAAATTCATACTTCGAAAGAGAGTCTTTTGAAGCATATCATCTGCCAGTCGGGCGAACTAAAGGATAATGCTAACGTTGCTATTGTGTGTCCGCTTTGTGTCCTTCCACAGGGTAGCTATTCGTCGGAGGGTGAATTTCGCGATCATTTACAACAACACGTTGCTTCTCAGCAAAGTGGTAATTTCTGCGTTTTACCTTCTTGCAAGTATTTAGCGTACGATATCGATGACTTGGCCAAGCATATTATCGGCACTCATACCAATCAAATTGTCGCCGATTCTAATTGTCCGTTGTGCAAAAATCCTAAATCATCGGCTCCGTACTTTAGCGGTCCAACTGTCGAACCGGAGTTGTTGAATTCTTACATCGAAGAACTAGATGGAGCCGAAGAAACATGTCCATTGTGTAATACAGTGCTGAAAGATCTCAATACGGTATTGGTATCCGAAAACGAGGTAATTTCTTTCGAGAAACCAAAATATTATCGATGTACTATATGTAATTCGGGATTTAGTACGCAAACTAAAGTTACCAAACATGCTTGTCGTCAATTACATACCACTATCTGTCCCGAATGTCACCGACaattcaattcgaaaaaaagacTCGTGTTCCATTTACAATCTCATATCGATCCATCGATGACGTTAAGATGCGACGTGTGCATGTTGACGTTTAGTGACGAAACAACCTGTTACGACCATGTTCGATTCAGCCACGAGTCGGAAACGTTGTGTTGCGATACGTGCGGTAAAACGTACATAACCAGAATTGGACTCAGTATGCATCAAATGTATCACGACGACGTTCGTAAATTCAAATGCTCGGATTGTGGTAAACGTTTTTTGAATCAGGCCACTCTGAAAGAGCACAGAGTTTCGCATTTGAATGTCAAGCCGTTCCAGTGCGATATTTGCGGAAAATCGTTATCACGAGCGTCTCGTTTGCGTATCCACTTGAAAGTTCACTCCGCCAGGAATAGTACTAATTTCCAGAAATGTTACACGTGTAAAGTTTGCGGTTTCGTATCATTTTCTAGCGAACGTCTTCTCGAACATAATGTTAAAACGCATAACAACAACGAAAACGACTCCAAGACCTCCATCCTGCATAAGCTGTACCGTTGCGAATTTTGCGACAACTGTTATGAAATGCCGTCTCTTTTGCATTCTCATAGAGAAACCCATGCTCCCGACACAACCGAAAATCCTTTTGTTTGCGGTCTTTGCAacggatttttcaaaacttactcGCGTTTAGTTACGCATAAACTTTCGCACGGCATCAACACCGAAACTCATATTTTGCAAATTAGCGCGAGTCTAGAAAGTTCCGATAGTTTCATTATTCCGCAATATTTCTGCTGTAAATACTGCGATAAATTGTACGAGCAGTATACCGCGTACAATATTCATATGAAACATTCCAAGCATTTTGTTCCCAAGGATAAATCTAGTCCAAAACGAAAATCAGACGATGTCGTCAAAATAAATCGTAAATCGAGTCCTAAAATTCGTTCTACCAACGTcgtcgataaaaaatataaacaaagaGAAATCGAACTGGCCGTTCAAAGTTTGAACAAAGAAAATATACCTCCGGTTATTAAAGAATCCAGACCGATCGTTCGCGTGCATTCCAGCCTAGAAAAGTTGATTTGCTGTaaatgcggtaaaaatttcgcatCCGAGAAGTTACTTCGTATTCATGAAAACCGGCACAACCCTCGCcgtaaaagaaaaacttactCTTGCGAAGATTGTCCAAGATCTTTTACCAATAAGACTGAACTGAGGAAGCATGAAAATGTCCACCATAAGCCTCAGttaatgtgtgaaaattgcgGCAAAGAATTCCGATACAAAGGCTGGTATTCGTTGCACGTCGATAATAAAGTTTGCTTCCGAACCGACGAAGAAGAAATTCCAGAAGAGTTGAAAACAAACTTACCATTCACCGATATTATAAATCGTATATTGCTGTTTTAA
- Protein Sequence
- MEAANRNSATNKTTIKFRELCEISNFLNTGLTPEQLYYCCKLIEKGVNPEALAHSVKTVREEDKNDDSFDEETVRGRGRPLGARTVVKSVNLKKVAEIDQKRSNHLQCNICNIQFNQLVNFANHCVKNHFNSSYYQFDCGFCYEIHTSKESLLKHIICQSGELKDNANVAIVCPLCVLPQGSYSSEGEFRDHLQQHVASQQSGNFCVLPSCKYLAYDIDDLAKHIIGTHTNQIVADSNCPLCKNPKSSAPYFSGPTVEPELLNSYIEELDGAEETCPLCNTVLKDLNTVLVSENEVISFEKPKYYRCTICNSGFSTQTKVTKHACRQLHTTICPECHRQFNSKKRLVFHLQSHIDPSMTLRCDVCMLTFSDETTCYDHVRFSHESETLCCDTCGKTYITRIGLSMHQMYHDDVRKFKCSDCGKRFLNQATLKEHRVSHLNVKPFQCDICGKSLSRASRLRIHLKVHSARNSTNFQKCYTCKVCGFVSFSSERLLEHNVKTHNNNENDSKTSILHKLYRCEFCDNCYEMPSLLHSHRETHAPDTTENPFVCGLCNGFFKTYSRLVTHKLSHGINTETHILQISASLESSDSFIIPQYFCCKYCDKLYEQYTAYNIHMKHSKHFVPKDKSSPKRKSDDVVKINRKSSPKIRSTNVVDKKYKQREIELAVQSLNKENIPPVIKESRPIVRVHSSLEKLICCKCGKNFASEKLLRIHENRHNPRRKRKTYSCEDCPRSFTNKTELRKHENVHHKPQLMCENCGKEFRYKGWYSLHVDNKVCFRTDEEEIPEELKTNLPFTDIINRILLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01263890;
- 90% Identity
- iTF_01263890;
- 80% Identity
- -