Basic Information

Insect: Ferrisia virgata
Gene Symbol: -
Assembly: GCA_900060175.1
Location: FIZR01011172.1:1-1568[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.069 6.2 7.6 3.1 1 11 57 67 57 70 0.95

2 10 8.8e-06 0.0008 19.9 1.2 2 23 88 110 87 110 0.96

3 10 0.00066 0.06 14.0 7.7 1 23 115 137 115 137 0.97

4 10 2.3e-05 0.0021 18.5 3.1 1 23 143 165 143 165 0.98

5 10 2.8e-05 0.0025 18.3 2.1 1 23 177 199 177 199 0.98

6 10 0.00027 0.025 15.2 2.4 2 22 209 229 205 229 0.93

7 10 1.3 1.2e+02 3.6 1.7 1 16 236 251 236 258 0.71

8 10 1.8e-06 0.00016 22.0 2.9 2 23 265 286 264 286 0.97

9 10 7.9e-06 0.00072 20.0 2.4 1 23 292 314 292 314 0.97

10 10 0.016 1.4 9.6 1.5 1 23 320 342 320 342 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.069	6.2	7.6	3.1	1	11	57	67	57	70	0.95
2	10	8.8e-06	0.0008	19.9	1.2	2	23	88	110	87	110	0.96
3	10	0.00066	0.06	14.0	7.7	1	23	115	137	115	137	0.97
4	10	2.3e-05	0.0021	18.5	3.1	1	23	143	165	143	165	0.98
5	10	2.8e-05	0.0025	18.3	2.1	1	23	177	199	177	199	0.98
6	10	0.00027	0.025	15.2	2.4	2	22	209	229	205	229	0.93
7	10	1.3	1.2e+02	3.6	1.7	1	16	236	251	236	258	0.71
8	10	1.8e-06	0.00016	22.0	2.9	2	23	265	286	264	286	0.97
9	10	7.9e-06	0.00072	20.0	2.4	1	23	292	314	292	314	0.97
10	10	0.016	1.4	9.6	1.5	1	23	320	342	320	342	0.95

Sequence Information

Coding Sequence: TATACTGATGAATTAACTAATAATTCGTTGAGtaacttatcaaaaatattccaagtTTTGAATAGTCCCGAAGAGATGTGTGAAAATACATTATCTTCCGCTTCACCTTCGCCTTTACCTGAAAAACGACTCAACGCAACTGATCAATTCGAATCTGCCGAACCATTATATAAATGTGAGAATTGCGACAAGACATTTTCATGCGAAGATATTTTAGCCATGCATAAATTGAGTCAATGCAAcgatcaaaatgaaatgaaaaagtgcTATCTATGCGACGAAACATTTTCAAGCTCTTCAAAATTATCAGAgcacatgaaaaatattcacgaTGATCGCAAATTCCAGTGCGAAGAATGTGGCAAGTGTTTTCTTACGAAGCATCATTTACGTATGCATAGTTCAATGCATTTAGATTCCAAGCCATTTTCATGTCAGAAGTGCGGTACCAATTTTCGTTACAAAAAAACTTACGAAACTCATATTAAAATTCAcgctaatgaaaaaaaatctacggaCGAACAAACATTTGTTTGTGACATTTGCGAGCAACGTTTTTCTACACGTAATTCCTACATACATCACGCTCGAAGTCATAAAAACGTTACTGGTAAATGTAAACTGATGTGTTTCGTTTGTAATCAAACTTTTGCTTCGAAACGTATGCTAACTCAGCATTTACGTACGCAATGCGGAGAAAAAACTCATACATGTGACGTTTGTGGAAAAGAATTATTAACTAAAGAATCGTTGGATTGTCATAAACTTATTCACGTCGATGAAAAGTCTCTAGTTTGTAAGACCTGTGGAAAAACATTCTCACACCGAAAATATTTTGTCGTGCACCAACGTATACATACTGGTGAGAGACCATATAAATGTATCACTTGCAATAAAACCTTCACTCAAGCATCTACTTTAACAGTACATCGACGATATCACACTGGAGAACGTCCGTACAAATGTTTTGTCTGTTCTAAAGGTTTTGTCACGCGTACTATTATGTTATCTCATttgaaatatcataaaaaatcatga
Protein Sequence: YTDELTNNSLSNLSKIFQVLNSPEEMCENTLSSASPSPLPEKRLNATDQFESAEPLYKCENCDKTFSCEDILAMHKLSQCNDQNEMKKCYLCDETFSSSSKLSEHMKNIHDDRKFQCEECGKCFLTKHHLRMHSSMHLDSKPFSCQKCGTNFRYKKTYETHIKIHANEKKSTDEQTFVCDICEQRFSTRNSYIHHARSHKNVTGKCKLMCFVCNQTFASKRMLTQHLRTQCGEKTHTCDVCGKELLTKESLDCHKLIHVDEKSLVCKTCGKTFSHRKYFVVHQRIHTGERPYKCITCNKTFTQASTLTVHRRYHTGERPYKCFVCSKGFVTRTIMLSHLKYHKKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -