Basic Information

Insect: Ferrisia virgata
Gene Symbol: -
Assembly: GCA_900060175.1
Location: FIZR01026219.1:3229-6385[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00025 0.023 15.3 4.2 1 23 241 263 241 263 0.97

2 11 9.1e-06 0.00082 19.8 1.3 1 23 269 291 269 291 0.98

3 11 0.0034 0.3 11.8 6.1 1 23 297 320 297 320 0.95

4 11 0.052 4.7 8.0 3.3 1 21 326 346 326 348 0.95

5 11 0.00016 0.014 16.0 2.8 1 23 354 376 354 376 0.99

6 11 5.4e-05 0.0049 17.4 1.9 1 23 382 404 382 404 0.98

7 11 8.9e-05 0.0081 16.7 1.5 1 23 413 436 413 436 0.97

8 11 0.00094 0.085 13.5 3.3 1 23 442 464 442 464 0.97

9 11 0.0013 0.11 13.1 1.0 2 23 471 492 470 492 0.97

10 11 2.1e-05 0.0019 18.7 5.4 1 23 498 521 498 521 0.96

11 11 8.4e-07 7.6e-05 23.1 5.4 1 23 535 557 535 557 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00025	0.023	15.3	4.2	1	23	241	263	241	263	0.97
2	11	9.1e-06	0.00082	19.8	1.3	1	23	269	291	269	291	0.98
3	11	0.0034	0.3	11.8	6.1	1	23	297	320	297	320	0.95
4	11	0.052	4.7	8.0	3.3	1	21	326	346	326	348	0.95
5	11	0.00016	0.014	16.0	2.8	1	23	354	376	354	376	0.99
6	11	5.4e-05	0.0049	17.4	1.9	1	23	382	404	382	404	0.98
7	11	8.9e-05	0.0081	16.7	1.5	1	23	413	436	413	436	0.97
8	11	0.00094	0.085	13.5	3.3	1	23	442	464	442	464	0.97
9	11	0.0013	0.11	13.1	1.0	2	23	471	492	470	492	0.97
10	11	2.1e-05	0.0019	18.7	5.4	1	23	498	521	498	521	0.96
11	11	8.4e-07	7.6e-05	23.1	5.4	1	23	535	557	535	557	0.98

Sequence Information

Coding Sequence: ATGGCAGATATTGACGTAAAAAATGaaAACGCTAATGCTGATATTAGCAATCAgagcataaaaattgaaattgtagATCAACCATCGAATAATGATGGTCCGCATGAAAATATCACCGATTTACAAAACTATTTACAAACTTTCAATAAAGAGATTCTTACAGTTCAAACAGAATATGGTGAGTCTCAGTCTAATGCAGACGAGGAAGGAAACACTACTTTTTATGTAACGGAATCGGGAGAATACTTCTATCAAGCTGATACAGTAGATGGACAAGTGATGACTGTAATAAGCGGTGATAAAGAATCAGAAGTGCAAACTGCGGGAACAGTTTCCGTTGAAAATCAGAAGAAGTCTAGTCAAAAACAAACCGTAGAGATTAACGAAAATAATGCTACCGCTGACGGTCAAAATAAGACTGTTAATGAGTTAACTCAATCTAATCATATCCTCTTGGGAGATGATGCCTATCAGACAGTTACCATTGTACCTACTGAAACAAATCCGGGGGAGGTAAGCTATGTGTTAATTGTTCAGCAACCCGACGaaggagaaaaagaaaaagaaaatgatggGGAAGGTGATGATCAGGATCTTAcgatttatgattttgaggACGCTGATGACCCTTCAGCCAATGGAACAGCGGATTCTTCTGACGAAGatgataaatcaaaaattatgaaaattgttaaaaagtcACAAAGTGTATCCCAAGCTCATATgtgtaattactgtaattacaCCAGCCCtaaaaaGTATTTACTATCGAGGCATATGAAATCTCATTCTGAAGAACGACCTCATAAATGTAGTGTTTGTGATCGTGGATTTAAAACTATAGCTTCATTACAAAATCACGTGAATACTCATACGGGTACTAAACCTCATCACTGCAAGCACTGCTCTAGTGCTTTTACCACATCAGggGAACTCGTGCGTCATGTTCGTTACAAACATACCCATGAAAAACCGCATAAGTGTTCAATTTGTGATTATGCCAGTGTTGAATTGAGTAAAATGAGAAACCATATGAGATGTCATACTGGAGAACGTCCTTACCAGTGCCAGCATTGTACCTACGCTAGTCCAGATTCATTTAAGCTGAAACGTCATCTTCGTATTCATACTGGAGAAAGACCATACGAATGTGATATATGTCATTCAAGGTTCACACAGTCGAATAGTTTGAAAGCGCATAAACTGATTCATAGTGATGAAAGCGATAAACCTGTATTTAAATGCGACCTCTGCCCAGCTTCCTGTAGTAGAAAAACGGATTTACGTattcatgttcaaaaattacatacctCTGATCGATTATTCAACTGCCGTAgatgcggtaaaaattttcctgacAGATACACTTATAAAaTGCATAATAAAACTCACGAAGgggaaaaatgttggaaatgtGATCTTTGCCCGTATGCGTCGGTGTCACACAGACATCTAGAATCGCATATGTTAATTCATACTGATCAAAAACCATTCCGTTGTTCTTTGTGTGATCAATGTTTCAGacaaaaacaacttttaaaGCGTCACCAAAATTTATACCACGATCCTACTTATGTTCCTCCGGCCCCTAGAGAAAAAACCCACGAATGTCCCGAATGTAAACGTGCTTTCCGTCACAAGGGTAACCTGATTCGTCATATGTGTATGCATGATCCCGATTCTGAAGCTGTGCAAACTGCCACTGCATTGAAAATGGGACgtcaaaagaaaattcaagttgTAAATGGAGAAGAAATAAAGGTCGTATCGAACGAGGAAGATGTTGTTATGAAGGATGAATTTATCGAAAGTGACGCTAAATTGCTGAAAAACGAACTGGGTAATCAGCTAATTGAAGGAGCTGATGGGCAACATTACGTTGTATTAGAAGTCATCCAGTTACAAGGTGGTGATGGAGAACAGGCAGTAGCTGTGGTGTCTGaaggagattttcaaaatggaactTTGAATTTAGATAATTCAGATGCCAATCAATTCATTACTCCGGATTATGAGGAAAAACGTGATAATAGAAATGAAgcgaaaataatgaaaaaatctgcAGATTCGTCTAGTGACGTGCAGAATTGCTTTGGTttcgatgacgatgatgaagaAATGGAAAcatga
Protein Sequence: MADIDVKNENANADISNQSIKIEIVDQPSNNDGPHENITDLQNYLQTFNKEILTVQTEYGESQSNADEEGNTTFYVTESGEYFYQADTVDGQVMTVISGDKESEVQTAGTVSVENQKKSSQKQTVEINENNATADGQNKTVNELTQSNHILLGDDAYQTVTIVPTETNPGEVSYVLIVQQPDEGEKEKENDGEGDDQDLTIYDFEDADDPSANGTADSSDEDDKSKIMKIVKKSQSVSQAHMCNYCNYTSPKKYLLSRHMKSHSEERPHKCSVCDRGFKTIASLQNHVNTHTGTKPHHCKHCSSAFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRCHTGERPYQCQHCTYASPDSFKLKRHLRIHTGERPYECDICHSRFTQSNSLKAHKLIHSDESDKPVFKCDLCPASCSRKTDLRIHVQKLHTSDRLFNCRRCGKNFPDRYTYKMHNKTHEGEKCWKCDLCPYASVSHRHLESHMLIHTDQKPFRCSLCDQCFRQKQLLKRHQNLYHDPTYVPPAPREKTHECPECKRAFRHKGNLIRHMCMHDPDSEAVQTATALKMGRQKKIQVVNGEEIKVVSNEEDVVMKDEFIESDAKLLKNELGNQLIEGADGQHYVVLEVIQLQGGDGEQAVAVVSEGDFQNGTLNLDNSDANQFITPDYEEKRDNRNEAKIMKKSADSSSDVQNCFGFDDDDEEMET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01262814;
90% Identity: -
80% Identity: -