Fvir005456.1
Basic Information
- Insect
- Ferrisia virgata
- Gene Symbol
- -
- Assembly
- GCA_900060175.1
- Location
- FIZR01011172.1:2968-5141[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00067 0.06 14.0 3.4 1 23 110 132 110 132 0.97 2 12 0.0078 0.7 10.6 5.3 1 23 138 161 138 161 0.96 3 12 0.057 5.2 7.9 0.9 1 14 250 263 250 263 0.92 4 12 0.0033 0.3 11.8 3.9 1 23 354 377 354 377 0.96 5 12 0.0094 0.85 10.3 6.2 1 23 384 406 384 406 0.98 6 12 0.059 5.4 7.8 0.6 3 19 414 430 412 435 0.92 7 12 1.7e-05 0.0016 19.0 0.8 1 23 440 462 440 462 0.98 8 12 5.6e-06 0.00051 20.5 1.1 1 23 468 491 468 491 0.96 9 12 4.7e-06 0.00043 20.7 2.8 2 23 499 520 499 520 0.98 10 12 0.00078 0.071 13.7 2.1 2 23 527 548 526 548 0.96 11 12 1.6e-07 1.5e-05 25.3 1.4 1 23 554 576 554 576 0.99 12 12 0.00044 0.04 14.5 0.9 1 21 582 602 582 603 0.95
Sequence Information
- Coding Sequence
- ATGGgtttaatttatcatttcagATTGGGCGAAGAATTGATTTACCTTTATGTAGAATCCGAACAGCAAGAGTCCAACGAAAAACACTATCGGTCCTCTTCTTCAAACCAAATGAACCAGTTTAGTTTGCTGTTCGATAATGATCTTGATCAACATTCAGTATTGGAAATTGAAGATCTTAATAACGCTAACATCATCAAATCGAACACCGAACAAACAAGCTCTAGTTATTCTGTAGAATTTCCTCAGTGTGATCGTTCTGccgatgaattaaaattatacaataaaaAGCGTTATAAGAGCAACGACGGTGGcgaaaatatattatattgtTGTGAAATTTGCGAGCTTTCGTTTTCAGATAAAACTGATTACCACAAACACGAACTGGTCCACTATGTTGACTACCCTtatgaatgtaaattttgtaaaaatcgtttcaaaagaTTTAAACAATTAGAGAATCATAAAATGTACTATCACGTTGAAGATTCTTCGGAAGAAAGTGATTCCAATGGTTCGAAGATTTGTGACaatgaagaaattgataaatgTGGCGATGATACGAAAGAAAAGCAGTATCGCGAAGTGTTGACTTTGagcaatcaaaaaattcaatgtgaTGTAGTTAAATCCCCGtctacaattttaaatgagaatagtaaaaaaaattatgaaactaCTAGAATGCTTGGTTATGAGATTGACAGAAAGACACATTCGTTCAAGACTAAtaacaaagatttttttatatgtgaaacctgtggtcaaaaattttctacgtctAGTATTCATAAATgctccaaattgaaaattactccaaTattCAACTCGAACCCCAAAGTTGTTTACAGATCATTCGATTTCACTAGTAAAGTCAAAACGAAACAAATCAAACGAGAAGTTGATAGtgaaaatattaaggaaaagaaagtaaaaaaattgaaaataacgttgaagaaaaatctctCCAGTACGAGCTCCAACGTaacaaatggtaaaaatactaagaaaaaagttaaagtaaaattaaaattaaaaccgaaCGAAGAAACGATTTTCAAATGTAAGCATTGTGATGAAGAATTTGACACTTCGGTCAAACGTAGAAAGCACGAACAAAGTACACATGCTAAACGAGATGTTAAGTATAACTGCGATAAATGTAACTATAGTACTTATACGAAAGGCTGTTTCACTACTCATTTAAAACGACATATAAAACAGTACGCTCTATTTTGCGAAGAATGTAATGTaggatttttcaacaacacCGAACTCACATCTcacgatataaaatttcataattctcAGCCGTTCCAATGTGCCATTTGTAACGATACGTTCACTTCCAAAGGTAATCTATATAGTCATATTAAAAGTCACGATCCTAATAATTCTTTCGTTTGCGAAATCTGTGGAcgaacgtacaaaaaaaataacagctACAAAAGACACATAGCCAGATCGCATTTAGGTTTAACTACCAAAGCTCAGTGTCAAGTTTGTCAAAAAGTTCTCAGTTCGAAAGAACATCTTAGAAGACACATGTTGACTCACACTGACGAACGAAATTGGGTATGCTCAACTTGTGGTAAATGTTTCCTTAGTAAAACTTATTTAACTGAGCATTCTAGAATTCATTTGGGTATAAGACCATATAAATGTGAGATTTGCGAAAAATCATTCACCCAAAGAGGTTCGCTGACCATTCATAAGCGTTCACATACTGGCGAAAGACCGTACAGATGCGAATATTGTAGTAAAGGTTTTGTAATGTCTACTTTACTTAGAtatcacttgaaaaaatgtgcaGAGGCTAAAATGAACGCgcatttaattaataattcgGCTTCTGTACCTCGGGTAGAATTCAATAATGTAATCGCGTATAGCAAGTTACCACAACAATCAAATGCGGCAGAATCTACGGAAATAGATCCATTAAATAACTGTGCTGTTATTCATGCCACCAAATAA
- Protein Sequence
- MGLIYHFRLGEELIYLYVESEQQESNEKHYRSSSSNQMNQFSLLFDNDLDQHSVLEIEDLNNANIIKSNTEQTSSSYSVEFPQCDRSADELKLYNKKRYKSNDGGENILYCCEICELSFSDKTDYHKHELVHYVDYPYECKFCKNRFKRFKQLENHKMYYHVEDSSEESDSNGSKICDNEEIDKCGDDTKEKQYREVLTLSNQKIQCDVVKSPSTILNENSKKNYETTRMLGYEIDRKTHSFKTNNKDFFICETCGQKFSTSSIHKCSKLKITPIFNSNPKVVYRSFDFTSKVKTKQIKREVDSENIKEKKVKKLKITLKKNLSSTSSNVTNGKNTKKKVKVKLKLKPNEETIFKCKHCDEEFDTSVKRRKHEQSTHAKRDVKYNCDKCNYSTYTKGCFTTHLKRHIKQYALFCEECNVGFFNNTELTSHDIKFHNSQPFQCAICNDTFTSKGNLYSHIKSHDPNNSFVCEICGRTYKKNNSYKRHIARSHLGLTTKAQCQVCQKVLSSKEHLRRHMLTHTDERNWVCSTCGKCFLSKTYLTEHSRIHLGIRPYKCEICEKSFTQRGSLTIHKRSHTGERPYRCEYCSKGFVMSTLLRYHLKKCAEAKMNAHLINNSASVPRVEFNNVIAYSKLPQQSNAAESTEIDPLNNCAVIHATK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -