Fvir007886.1
Basic Information
- Insect
- Ferrisia virgata
- Gene Symbol
- -
- Assembly
- GCA_900060175.1
- Location
- FIZR01026758.1:73392-75190[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00066 0.06 14.0 5.0 3 23 133 153 132 153 0.97 2 10 1.2e-05 0.0011 19.5 1.3 1 23 158 181 158 181 0.93 3 10 3.9e-05 0.0036 17.8 2.4 1 23 187 210 187 210 0.98 4 10 9.1e-06 0.00082 19.8 0.1 1 23 237 260 237 260 0.96 5 10 8.2e-05 0.0074 16.8 4.3 1 23 266 289 266 289 0.97 6 10 0.015 1.4 9.7 0.3 3 23 306 327 305 327 0.95 7 10 3.2e-05 0.0029 18.1 1.7 1 23 331 354 331 354 0.97 8 10 0.02 1.9 9.3 1.5 1 23 359 382 359 382 0.95 9 10 2.3e-05 0.0021 18.5 0.8 1 23 388 410 388 410 0.99 10 10 6.3e-06 0.00057 20.3 1.3 1 23 416 438 416 438 0.97
Sequence Information
- Coding Sequence
- ATGTTTGACGCAATaattttaattgaaattggtGACAAAACAGACGGAACCagtttagaaaatattaaaatagaGGATGCTACCGGTACTTCAATGGAAGATATTGTTAAAATAGAATTTGTTGATCCTATCGACGTAGAAACTAAACTCGAACAGGAAGAAACTATTGATCCGGATCCGTATGATCCTGTCGAATCAGTATCATGTGTTCCTGTTCCATCAGATCCTATCGAATCAACAACGAATAACATGAAACCACCGGAACCTACCGTGTCAATATGTGCAAATACTGAACCACTAAGTGTTGTCGAATCCAAAGTGAATAATTCTTCAAATAAGGTATCGGAACCGGTTCCTCGTAAACCTAAAAGAACGCCTCGAAGAGCATCTCGTATTTGTCATTTGTGCGGTAAGCATTACAATACCGAAAGCGGTTTCAGACATCATTTAATTATGCACGAAGCTCCTTCGTATTCTTGCCACGAATGCGGTCACGTTTTCTAcgaagctcaaaatttaaaaaagcacTTGGCCGCTATACACTCCGATGAAAGGCCGTTTCAGTGCCATTTGTGTGGAAATAAGTATAAAAGGAAAGATGTTTTGCAAGAACATATTAAACGAGTGCACGATGGCATTAAAAGAGTTTGGAATAtcgaaactttgaaaaaatatagaaaaaaacagcaaaatcagaaaaaatataagtacacGTGTCCCTATTGTGATAAAGTTCTCGGAACTAAAGGATATTTGAACGATCACATTAATGGCGTTCATACCAAAGAAAAGCTCTATAAGTGTAACGAATGCGAAATGTCCTTCACTCGGAAAACTACGTTTaaatatcatttcaaaagagctcatattttaaagaaaaatgtattGGAACCGAGGGGATCGTTTTTAAAAGATTGCGAATATTGTGgGTTACagtttcaaatcaaaaaatactacgAGCAGCATATAGCCTCAAAACACTTGCATACTTTCAAATGCGCCTACTGTGAAAGTACCTTCGACAATAAGTATCAATTAACAAAACATACTGATACAATTCACTCCGATAAGATATTTCGTTGTGATTCTTGTAATAAAGGATTTGGCGAAGATTTGCTTCTGAAAAGACACATTTACGTTTGCCATACCGATAGAAAACCTTACGAGTGCCACGAATGTGGATATAAAGCTAATAAGAAAGCTACGCTAGCTGTTCATATACGTAGACATACTGGAGAAAAACCTTATCAGTGTGATATGTGTCCTAGACGATTTACTCAATCTGTTGATTATCGTAAACATAGagcaaatcattttaaaaaaaactag
- Protein Sequence
- MFDAIILIEIGDKTDGTSLENIKIEDATGTSMEDIVKIEFVDPIDVETKLEQEETIDPDPYDPVESVSCVPVPSDPIESTTNNMKPPEPTVSICANTEPLSVVESKVNNSSNKVSEPVPRKPKRTPRRASRICHLCGKHYNTESGFRHHLIMHEAPSYSCHECGHVFYEAQNLKKHLAAIHSDERPFQCHLCGNKYKRKDVLQEHIKRVHDGIKRVWNIETLKKYRKKQQNQKKYKYTCPYCDKVLGTKGYLNDHINGVHTKEKLYKCNECEMSFTRKTTFKYHFKRAHILKKNVLEPRGSFLKDCEYCGLQFQIKKYYEQHIASKHLHTFKCAYCESTFDNKYQLTKHTDTIHSDKIFRCDSCNKGFGEDLLLKRHIYVCHTDRKPYECHECGYKANKKATLAVHIRRHTGEKPYQCDMCPRRFTQSVDYRKHRANHFKKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00194638;
- 90% Identity
- -
- 80% Identity
- -