Fvir015246.1
Basic Information
- Insect
- Ferrisia virgata
- Gene Symbol
- -
- Assembly
- GCA_900060175.1
- Location
- FIZR01008318.1:32990-34143[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.2e-06 0.00011 22.6 1.3 1 23 35 57 35 57 0.95 2 10 0.063 5.7 7.8 0.7 2 23 63 83 62 83 0.91 3 10 1.4e-05 0.0013 19.3 2.4 1 23 90 113 90 113 0.93 4 10 1.7e-05 0.0016 19.0 2.7 1 23 124 147 124 147 0.97 5 10 0.0015 0.14 12.8 4.9 1 23 153 176 153 176 0.95 6 10 1.2e-05 0.001 19.5 0.8 1 23 183 205 183 205 0.99 7 10 2.8e-05 0.0025 18.3 0.4 1 23 211 233 211 233 0.96 8 10 2.4e-06 0.00022 21.6 0.8 1 23 239 262 239 262 0.97 9 10 4.9e-06 0.00045 20.7 3.4 1 23 268 291 268 291 0.97 10 10 5.4 4.9e+02 1.7 0.0 5 17 299 311 298 312 0.87
Sequence Information
- Coding Sequence
- ATGGATTTACAATGCGAACCAGAAATTAATTGCAGTGCAGCAGAAAAACCTGAATCTGAGAACCATTCGGAGACATGTACAGAAAACTCATCTTCTCCACGATACTTGTGCGACCAATGCCACGAATCATTTACACAAAAAAGCGAGCTCACCGATCACATGATCGAACACATTTACGATCTTTCGGTATGCCACATTTGCAGTAAAACCGTCTCAAAAGAGATGTACAAAATTCACGTAGATCTGCACCAGAGAAAAAACGAACTATTCAGGTGCGGCACATGTAACAAATACTTCTCCAGTAAAGGTACTTTAAAACGTCATCTAGTTAATAAGCATAAATCTAACACCCGAAAGCGTAAACCGCGCTACAAATGTCACGAATGCTACAAAGTGTTTTACACGAAAACTGTCCTCGAACAACACATAAGTCGAGGACACGCCGAGATGGAAATTTTCGTATGCGATAAAtgctgcaaaaaattcaaaacctacGATGCCTTGAGGAAGCACATAACGAACAAACACGACACAGACTCGACCACATATCAATGCAACTATTGCGAGAAATTTTACGccagcaagttgaaattagccCTTCACATACGAATCCATTCGGAAAATAAACCCTATAAATGTAATCTGTGCGGAGAATCGTTTCGTTTGAAAGCTGCGCTGAATCTGCATTCAACGTCTCACCTTACATCTGTATCATTCCAATGTGGCgtttgtgaaagaaaattcgtTAGGAAGATGAATTTACAGAATCACCTTAGCAAAGCTCACACAGAAGGTAGAAGACATACGTGTGAGCAATGCGATCGAAGTTACAGTCGCAAGGATACCTATATCAGGCATGTTAGAAAGCTCCACACGCCGCAGACCTCCAGTTCGAagtgtgatgaaaatttcgaaaattctaaTACCCTCGAAATAAGTAAAACGAAAGAATATCCGACGAGcacacaaaatttgaaagcaAGCATCAAAGATGGTACGATAAAACGTGTTTGTACCGTTTTGTTGACTCGATACGATGAATAG
- Protein Sequence
- MDLQCEPEINCSAAEKPESENHSETCTENSSSPRYLCDQCHESFTQKSELTDHMIEHIYDLSVCHICSKTVSKEMYKIHVDLHQRKNELFRCGTCNKYFSSKGTLKRHLVNKHKSNTRKRKPRYKCHECYKVFYTKTVLEQHISRGHAEMEIFVCDKCCKKFKTYDALRKHITNKHDTDSTTYQCNYCEKFYASKLKLALHIRIHSENKPYKCNLCGESFRLKAALNLHSTSHLTSVSFQCGVCERKFVRKMNLQNHLSKAHTEGRRHTCEQCDRSYSRKDTYIRHVRKLHTPQTSSSKCDENFENSNTLEISKTKEYPTSTQNLKASIKDGTIKRVCTVLLTRYDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -