Basic Information

Insect: Ferrisia virgata
Gene Symbol: -
Assembly: GCA_900060175.1
Location: FIZR01026612.1:7035-9598[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0036 0.32 11.7 0.2 2 23 273 295 272 295 0.92

2 10 0.002 0.18 12.5 1.6 1 23 301 323 301 323 0.98

3 10 4.4e-06 0.0004 20.8 0.6 2 23 330 351 330 351 0.96

4 10 7.6e-06 0.00069 20.1 3.9 1 21 357 377 357 379 0.94

5 10 1.2e-06 0.00011 22.6 1.2 1 23 388 410 388 410 0.98

6 10 1.6e-07 1.5e-05 25.3 1.1 1 23 416 438 416 438 0.98

7 10 5.2e-06 0.00047 20.6 1.4 1 23 444 466 444 466 0.97

8 10 5.7e-06 0.00052 20.5 2.5 1 23 472 494 472 494 0.98

9 10 2.7e-05 0.0025 18.3 1.7 1 23 500 522 500 522 0.98

10 10 0.0026 0.24 12.1 5.2 1 23 528 551 528 551 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0036	0.32	11.7	0.2	2	23	273	295	272	295	0.92
2	10	0.002	0.18	12.5	1.6	1	23	301	323	301	323	0.98
3	10	4.4e-06	0.0004	20.8	0.6	2	23	330	351	330	351	0.96
4	10	7.6e-06	0.00069	20.1	3.9	1	21	357	377	357	379	0.94
5	10	1.2e-06	0.00011	22.6	1.2	1	23	388	410	388	410	0.98
6	10	1.6e-07	1.5e-05	25.3	1.1	1	23	416	438	416	438	0.98
7	10	5.2e-06	0.00047	20.6	1.4	1	23	444	466	444	466	0.97
8	10	5.7e-06	0.00052	20.5	2.5	1	23	472	494	472	494	0.98
9	10	2.7e-05	0.0025	18.3	1.7	1	23	500	522	500	522	0.98
10	10	0.0026	0.24	12.1	5.2	1	23	528	551	528	551	0.95

Sequence Information

Coding Sequence: ATGGAAACCCTTGGTCGGATATGTATTTGTAGGCTGTGCGCTTTGGAAAAAGACAGCTACCTTCGTATTTACGACGAAGAAGGATACAAACTAGCGCTTGGCattaaaattagtaaatatttacaaattcaAGTTGACGAAAAGGATTCCTTACCTAAAAGTATTTGTTGCGAATGTTACGCGAAGTTGGaagaatattcaaattttgttaacaATAGTCAAAATGCTCAAATAgcattgctgaaaatttttcctctttatgAAGACAGTTcgttaaaagaagaaaatctaTATCCTCACGATGCCATCTTCCATGCGCAATCGAActtgttgaattttaatacagctgagATGGATAAAGTAGACCAACGTGGAACAACTTTTGAATGCAacgatttaaatttaacaaCCCCTGACACAAATTGCTTTTTCGATAGTAATAAAGCTACCGATTGTTTATTTGAAGAAcgcaataaaattatacagaaTAACACTACTACTGATGAATGTCCTGCTGATTTGAATCAAGTTCAATGCAACGATATCAATAACGATTGTAGTAGCGTTAATTCGTCCGACTGTAATATATTCAATTCAcgtaaaaaatataataaaagaaaatgtgTTACTCCGGTACGTTATTTTACCAATAACGCGGCCACTGCTCGAACCAAACGAAAATTATGTCGTAAGAAAAAACTCGGAGCtgggaagaagaaaaaaacagaatcTGGTACCAATAAACAAGACCAAGAAGATTATAGTGAAAATGAATCGGAActgtttaaagaaaaatatttcaatcatATTCCTTGGATGTGTACCGGATGTGAAGCAAATTTTCCTACGTTAAGCGAATTACAAGATCATCACGCCAATTATCATTTGCAACCGTCCCGTTACATGTGTCCGTATTGTTATAAAGTCTATATGCAATATCAAGTTTTTGTGAGTCATATGAAAAAGCATCAGTGCGATACTGAAGCTACTTGCGACCAATGTGGTAAAGTATTCTCGTCTAAAAGAATGCTAGAATCGCACTTATTGCTGCACACTGATAAAAGACCGTACGAATGTAACCATTGCGGTAAATCGTTCCGGCAACAAAGCGCTTTATACGTTCATGGCAGATGTCATTTACCTGAGCATATGAAAGTCGAGTATTCTTGCGATCAATGCGATAAAAAtttttccaCCAAACCGAACTTAATAACGCACAAAAAAATCCATACCGGTGTTCGTAACTACGTATGCGACTTATGCGGCAAAAGTTTCGTCCAAAAAGGCAACTTATGTGCTCACAAACTGACTCATTCTAATAATAAACCGTTCACCTGTGAAATATGTAATAAAGAATTTAAAACATTAATGCAATTACGTAAACATAGCAATGTGCATACGGGTAAAAAACCCCACCAATGTGATACTTGCGGCAGAACGTTTCGAGAAAGAGGAACACTAAAGGAACATTATAGAATCCACACTGGTGCAATGCCTTTCTCTTGTGAATTCTGTGGAAAGGCTTTTAGATTCAAAGGCGTCTtaacgACTCATCGACGTCAGCACACCGGTGAAAAGCCATATTCGTGTATTGAATGTCAACATCATTTCACCAATTGGCCTAACTACAACAAGCACATGAAACGTCGCCATGGTATAAATACCAGCAAAGCTACTCGTATTAAATTAGATGATCCGCCTCAGAACGCTGCACTTCCTCAGGAAACAATCAATAGCAATAATGATACTATCGATATACCTACTTTCGAAGATACGCTCCAACCTGTTCCCACCGATAACGATAAAACGGTGGATTTATTCGATACTGCCAATACCGAAGATAGTATTGCAACGACCTATTTGCTATCACATCAGAATTATACGGATACTTCGCAGCAGCATCAGAATTCCATTTTGAACGCTTACTATAATATGACCACGTTACAGACTATCAATCAGACTAGCGAAGTTGTCGATATAATGAGTACAAATATGTACAGGTAA
Protein Sequence: METLGRICICRLCALEKDSYLRIYDEEGYKLALGIKISKYLQIQVDEKDSLPKSICCECYAKLEEYSNFVNNSQNAQIALLKIFPLYEDSSLKEENLYPHDAIFHAQSNLLNFNTAEMDKVDQRGTTFECNDLNLTTPDTNCFFDSNKATDCLFEERNKIIQNNTTTDECPADLNQVQCNDINNDCSSVNSSDCNIFNSRKKYNKRKCVTPVRYFTNNAATARTKRKLCRKKKLGAGKKKKTESGTNKQDQEDYSENESELFKEKYFNHIPWMCTGCEANFPTLSELQDHHANYHLQPSRYMCPYCYKVYMQYQVFVSHMKKHQCDTEATCDQCGKVFSSKRMLESHLLLHTDKRPYECNHCGKSFRQQSALYVHGRCHLPEHMKVEYSCDQCDKNFSTKPNLITHKKIHTGVRNYVCDLCGKSFVQKGNLCAHKLTHSNNKPFTCEICNKEFKTLMQLRKHSNVHTGKKPHQCDTCGRTFRERGTLKEHYRIHTGAMPFSCEFCGKAFRFKGVLTTHRRQHTGEKPYSCIECQHHFTNWPNYNKHMKRRHGINTSKATRIKLDDPPQNAALPQETINSNNDTIDIPTFEDTLQPVPTDNDKTVDLFDTANTEDSIATTYLLSHQNYTDTSQQHQNSILNAYYNMTTLQTINQTSEVVDIMSTNMYR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01472631;
90% Identity: -
80% Identity: -