Basic Information

Insect: Ferrisia virgata
Gene Symbol: -
Assembly: GCA_900060175.1
Location: FIZR01012431.1:46657-48541[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0041 0.37 11.5 0.1 2 23 114 135 113 135 0.95

2 12 0.00017 0.015 15.8 0.0 1 23 139 161 139 161 0.97

3 12 2.3e-05 0.0021 18.6 5.3 1 23 168 190 168 190 0.98

4 12 0.00038 0.034 14.8 0.2 1 23 197 219 197 219 0.97

5 12 5.5e-06 0.0005 20.5 4.9 1 23 225 247 225 247 0.98

6 12 0.00016 0.014 15.9 1.7 2 23 254 275 253 275 0.94

7 12 0.00011 0.0096 16.5 0.8 1 23 280 302 280 302 0.96

8 12 1.5e-05 0.0014 19.1 0.6 1 23 308 330 308 330 0.99

9 12 0.0011 0.098 13.3 3.5 1 23 336 358 336 358 0.95

10 12 2e-06 0.00018 21.9 0.9 1 23 364 386 364 386 0.99

11 12 0.089 8.1 7.3 2.8 1 21 392 412 392 413 0.91

12 12 1.6e-06 0.00015 22.2 4.4 1 23 429 451 429 451 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0041	0.37	11.5	0.1	2	23	114	135	113	135	0.95
2	12	0.00017	0.015	15.8	0.0	1	23	139	161	139	161	0.97
3	12	2.3e-05	0.0021	18.6	5.3	1	23	168	190	168	190	0.98
4	12	0.00038	0.034	14.8	0.2	1	23	197	219	197	219	0.97
5	12	5.5e-06	0.0005	20.5	4.9	1	23	225	247	225	247	0.98
6	12	0.00016	0.014	15.9	1.7	2	23	254	275	253	275	0.94
7	12	0.00011	0.0096	16.5	0.8	1	23	280	302	280	302	0.96
8	12	1.5e-05	0.0014	19.1	0.6	1	23	308	330	308	330	0.99
9	12	0.0011	0.098	13.3	3.5	1	23	336	358	336	358	0.95
10	12	2e-06	0.00018	21.9	0.9	1	23	364	386	364	386	0.99
11	12	0.089	8.1	7.3	2.8	1	21	392	412	392	413	0.91
12	12	1.6e-06	0.00015	22.2	4.4	1	23	429	451	429	451	0.98

Sequence Information

Coding Sequence: ATGTCATCCAACGTTTCTGACTCATTAATCGAAGAAAATACCATTTATCATGATTCTTCCACAGTTTATACTACAACAAGCATATTTTTGgaATGTCCCGCGGAAGATCCGTTATCGAACGAATTATTTATACAATCGGAGCTAGAAGAAATCGATGATAATAATCACGAACAAAAATTGGAACCGAATCTATtgtataatgaaaatgaacttGAAACTGAAACATCCAATCTACCTGATAAAAACCCTGCTATAACTCTGACAATTaggaacaatttcaaaaaattattcggttCTTCGCAACCAGATTCAAATAGCATCAGTATCAATAAAACTCTCGTTTGTAACATTtgtcaagaaaatttttacgaagaaCCTTTATTACGAAAACACGTTTTActtcactcaaaaaaatatttttgtgttaTTTGCGAAGAAGTTTTCGAAAACCAACCTAATTTAGTAGAACACGAGCAAACACATATAgcagaaaaaagtaaatatttttgtacagtatgccataggtattttttttcgcgtggAAATTTAAATCGTCATATGAAATCCCAcgaggaaagaaaaagaacattCAGTTGTGCCGAAtgcaatttgatttttagcgACGAAAAGCTTCTAGCGAaacacaataaaattcatttttttgaaaattcgtatacCTGTCACGATTGCGGTAAAACATTTTACAGAAGAAAACACATAATACGCCATGTTAGTGTCCATTTGAATCGAAAGCGACTCGAGTGTAAATTCTGTCAAAGAACATTCGTTCATCAAAGCAGTTTAAGTGTACACGAATTATTACATGCGAATGTAACTTATacttgtaaattttgttttcgagCGTTTTCCCTTCAATCTAATTTAATAGTTCATGAAATCCAGCATACAAATAAATCACCCTATCAGTGTCCCTATTGCCAGATATCGTTCAGTGAGAAGAAAACTCTTATACCTCATATAAGGAAACATCTGGACGAAAGACCTTACAGTTGCGATTGTTGCGATAAACGTTTTATTCGTCAGGCATCGTTAATCAAGCATCGAAGTTTCCATAGTGCAGAAAGACCATATAAGTGTTCTAAATGCAACAAATCATTTCCTTCTAATGATACGTTAATACCTCACTTAAGAACTCACATGAAAAATAAGCCGTTCTCTTGTGCTTGTTGCGataaaagattcaaaaataagagaatCCTTCGGAAACATGTTCGCGATTGCGTTAAAGTCGAAAGAAATACCTCGAACGATGATCAAACTTCATTCAAATGTACCCactgtgataaaaaatttttcaagtcttcGTCACTAGAATCTCACATGCTAGTTCATGCACCGAAAAAGACGGAGCAGTTTATAAGCAgtttaaaattacgatttaAATCGCTGCTACATTCTTACGAAgtcaaacaaatgaaaaaatttaccactaATGGTAATAATGACGAAATGCAGAGCTCATCGACAGacaataaagatgaaaaatttttgATTGGTAAGATTTCAATTCCTCCAAGTAAAATGGAACCTGAAGACAATAATCATAATTCGACCACTGGTAATACTAAATTACTTCTTGAAGATTGCGAAGTGTCTGATATGAAATTGATTAAGGACGAACCCGAGactagttga
Protein Sequence: MSSNVSDSLIEENTIYHDSSTVYTTTSIFLECPAEDPLSNELFIQSELEEIDDNNHEQKLEPNLLYNENELETETSNLPDKNPAITLTIRNNFKKLFGSSQPDSNSISINKTLVCNICQENFYEEPLLRKHVLLHSKKYFCVICEEVFENQPNLVEHEQTHIAEKSKYFCTVCHRYFFSRGNLNRHMKSHEERKRTFSCAECNLIFSDEKLLAKHNKIHFFENSYTCHDCGKTFYRRKHIIRHVSVHLNRKRLECKFCQRTFVHQSSLSVHELLHANVTYTCKFCFRAFSLQSNLIVHEIQHTNKSPYQCPYCQISFSEKKTLIPHIRKHLDERPYSCDCCDKRFIRQASLIKHRSFHSAERPYKCSKCNKSFPSNDTLIPHLRTHMKNKPFSCACCDKRFKNKRILRKHVRDCVKVERNTSNDDQTSFKCTHCDKKFFKSSSLESHMLVHAPKKTEQFISSLKLRFKSLLHSYEVKQMKKFTTNGNNDEMQSSSTDNKDEKFLIGKISIPPSKMEPEDNNHNSTTGNTKLLLEDCEVSDMKLIKDEPETS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -