Fvir008133.1
Basic Information
- Insect
- Ferrisia virgata
- Gene Symbol
- -
- Assembly
- GCA_900060175.1
- Location
- FIZR01019757.1:20877-24827[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.026 2.3 9.0 3.1 1 23 105 128 105 128 0.93 2 20 0.0024 0.22 12.2 1.4 1 23 144 166 144 166 0.89 3 20 0.003 0.27 11.9 5.8 1 19 172 190 172 195 0.89 4 20 0.00027 0.024 15.2 0.2 3 23 211 232 209 232 0.96 5 20 3.8e-05 0.0035 17.9 0.6 1 23 238 260 238 260 0.97 6 20 0.00023 0.021 15.4 0.8 3 23 268 288 267 288 0.96 7 20 0.0028 0.26 12.0 0.5 1 22 294 315 294 315 0.96 8 20 0.067 6 7.7 0.1 1 20 322 341 322 342 0.93 9 20 0.66 60 4.5 1.5 2 20 345 363 344 364 0.91 10 20 0.00083 0.075 13.7 1.8 1 23 368 390 368 390 0.97 11 20 0.0025 0.22 12.2 0.4 1 23 396 419 396 419 0.95 12 20 0.00025 0.022 15.3 0.1 1 23 425 447 425 447 0.98 13 20 8e-06 0.00072 20.0 0.9 1 23 452 474 452 474 0.98 14 20 7.2e-06 0.00065 20.2 2.4 1 23 480 502 480 502 0.98 15 20 0.0048 0.44 11.3 2.7 1 23 507 529 507 529 0.97 16 20 5.9e-05 0.0053 17.3 0.3 1 23 535 557 535 557 0.97 17 20 0.00077 0.069 13.8 0.9 1 23 569 591 569 591 0.98 18 20 3.9e-05 0.0036 17.8 3.1 1 23 611 633 611 633 0.98 19 20 6.9e-05 0.0062 17.1 2.9 1 23 639 661 639 661 0.99 20 20 0.0056 0.51 11.1 3.1 1 21 667 687 667 688 0.94
Sequence Information
- Coding Sequence
- ATGAAGAAAAcgaagagagaaagaaaaaaccaagAAGCTCcggaaaaatgttggaaacgACCAGTGATTGTATTAACTGATTTGAAATATCttcctaaaaaaataattctgcaAGATTCTCccgaaataattatcattaatGATCTCGGTAAAACAAGCGcagatgaaaataaagaaaatgaaaattctttcgtAAATTGTAGTATTGCTGAGGCAACGGTTGAAGGAGGTTTGGATAAAGCGCACgATGAAAACCGTTACGATTTATGCATCGATGCTGAAAATTCGGATTTGGCAAAAACAGTGAATGCTTTTGCTTGTAATCTATGCTACAAAAAGTTCGCAGATCGAAGCGCAATCCTTCATCATGTCTCAAATTGTCACAATTTTCCGAAAACTCGTGTAACTAAATCTTCCGAGCAGTTAATTTTTCTGTGTACCGTGTGTAACGTACGTTTCAAAAGTGAACGATACCTGCGACGTCATTTCGTTCTGCACGAAGACAATAAACCTTTTATGTGTACCAAATGTAAAATctattttaatcgaaaagATCATTTAAAACGTCATGATAAGAAAAAGCATCCCATCGAAAGCTCGCCAGttcaaaataggaaaaacagTTTCGGTTGCGAGGCTTGTGGAATCACTTATGAtcggaaaaatgaattaactAAACATATTATGAGATTACATTCTTCTGCGTTACCATTCGCTTGTGAAACGTGCGGAATGTCCTTCGTGGAAAAGACCACCTTGGAAAAGCACTCTAAAACTCATAAGAGCAAGAAAATGGTCGATTGCACTTTTTGCTCGCGTTCTTTTAGGGATGAAAGCACATTGAGGGATCATGTAACTATACATATGGGTTATAAATCGTTCAAATGTGATAAGTGTGGAGCTGCTTTTCgcttgttgaaaattttgaaacggcATCAACGCAGATATACTAGAAATAAGCAGTTTCTTTGCACTAAATGCAATGTTTCATATGATCTACCTTATCTTTTGAATGATCATATTGAACCGATTGTTTGTTATTATTGCCAAGAAATGTTCAATTGTagaaTACATTTAAAAACTCATACGGCTCCACCAAAGCACGTATGCACCACGTGTAAAGTTGCATTCAAATATAAGAAGCTTCTAAGTCAACATTTGATCATTCACGAGCCAGATAAACTTCATCGATGTTCAATTTGCGGTCTTGGTTTCGAGAGTAAAGATATTCTGAAAGATcacattttctcaattcaCCGTACTGGGAATCCATTCGAATGCGATCAATGTGGCGCTACGTTTAAATTGAAAGCTGGAATCGCTACTCATATGAAAGTGCATTTCGATAAGAAATACAATTGCGGAATATGTAAAGTAATGTTTAGAAAGAAAGATGATCTGGAACGACATCGAAAAGTACATTCGGATGAAAAACCGTTCTCGTGTtcgatttgtaaaaaatcgtttgcCCGCCGACAGTACCTATACTTACATATGAAGCTacataatgatgaaaaatttatttgtgatATTTGCAGAACTACGTTCAAATGTAGAGTTTATCTTCAGCGGCATATAATTAATCATTTAGCGGTCAGACCATATGCATGCTCCAAATGTGACTCTTCGTTTGCTTCCAAAGCTCTTCTAAGGTCGCACCTTAGTATTCATACACGTAATAATGAATCAATTCGTCCAGCTCAGTATACATGTCAGTACTGCGGTTTAAGGTATAGACTGATGATGAATTTGGTAACGCACCTGAAATTACACGGTCATCGAAGTACCCAAAAgaccgaagaaaaaaacatggaACCAGAAAAAGCGACCTTTACTTGTGCTATATGTTCAAGATCTTTCAAATATAGAAATTCTTTGCAGCATCATTTAATTTCACACTCCAATGACAAACCTTACGAGTGtagaaaatgtaatatttcttATAAATATCTGTCTAGTTACCAGCGTCATTTGAAAATGCATAACACagaaagtaattttcactGTGCCCATTGTGATTCCAagtttaaacgaaaaaatgagcTGATGTCACACTTTAGAGCTAATATTTGTAAACCGTAA
- Protein Sequence
- MKKTKRERKNQEAPEKCWKRPVIVLTDLKYLPKKIILQDSPEIIIINDLGKTSADENKENENSFVNCSIAEATVEGGLDKAHDENRYDLCIDAENSDLAKTVNAFACNLCYKKFADRSAILHHVSNCHNFPKTRVTKSSEQLIFLCTVCNVRFKSERYLRRHFVLHEDNKPFMCTKCKIYFNRKDHLKRHDKKKHPIESSPVQNRKNSFGCEACGITYDRKNELTKHIMRLHSSALPFACETCGMSFVEKTTLEKHSKTHKSKKMVDCTFCSRSFRDESTLRDHVTIHMGYKSFKCDKCGAAFRLLKILKRHQRRYTRNKQFLCTKCNVSYDLPYLLNDHIEPIVCYYCQEMFNCRIHLKTHTAPPKHVCTTCKVAFKYKKLLSQHLIIHEPDKLHRCSICGLGFESKDILKDHIFSIHRTGNPFECDQCGATFKLKAGIATHMKVHFDKKYNCGICKVMFRKKDDLERHRKVHSDEKPFSCSICKKSFARRQYLYLHMKLHNDEKFICDICRTTFKCRVYLQRHIINHLAVRPYACSKCDSSFASKALLRSHLSIHTRNNESIRPAQYTCQYCGLRYRLMMNLVTHLKLHGHRSTQKTEEKNMEPEKATFTCAICSRSFKYRNSLQHHLISHSNDKPYECRKCNISYKYLSSYQRHLKMHNTESNFHCAHCDSKFKRKNELMSHFRANICKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -